Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0276
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    40   6e-04
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    33   0.039
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   4.4  
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun...    26   5.9  
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    26   5.9  

>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +3

Query: 579 KFGCTQCSYRCQSPAILKIHERVHSGEKPFFVHVCDY 689
           ++ CT+C      P+ LKIH   H+GE+PF   VCDY
Sbjct: 467 RYRCTECLQGFSRPSSLKIHTYSHTGERPF---VCDY 500


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 594 QCSYRCQSPAILKIHERVHSGEKPFFVHVCDY 689
           +C  +   P++L+ H R HS E+PF   VCDY
Sbjct: 29  ECGKKYSRPSLLEQHLRTHSNERPF---VCDY 57



 Score = 30.7 bits (66), Expect = 0.27
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 585 GCTQCSYRCQSPAILKIHERVHSGEKPFFVHV--CD 686
           GC++  YR    + LKIH+R H+  KPF  H   CD
Sbjct: 59  GCSKAFYR---KSHLKIHKRCHTNVKPFSCHYDGCD 91


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 588 CTQCSYRCQSPAILKIHERVHSGEKPFFVHVCDY 689
           CT+  YR +       H R H+GEKP   HVC +
Sbjct: 31  CTKAFYRLEHQTR---HIRTHTGEKP---HVCTF 58


>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
           Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 96  ELRRTLGLAAAKARKQAK 43
           ELR+TLG A+A  RK+A+
Sbjct: 115 ELRKTLGAASATGRKRAR 132


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 322 WGRHLADPRTIPPRTVGRPSSAGV 251
           WG  L DP T+P +  G+  S  V
Sbjct: 143 WGTALGDPHTVPVKVSGKCGSVTV 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,123
Number of Sequences: 5004
Number of extensions: 42399
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)