Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0276
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873...    31   1.5  
03_01_0366 - 2848449-2849032,2849155-2849233,2849346-2849608,284...    31   1.5  
10_08_0380 - 17391427-17391435,17392026-17392097,17392215-173923...    30   2.7  
01_06_1230 + 35575840-35576020,35576122-35576170,35576365-355764...    28   8.2  
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912...    28   8.2  

>03_02_0472 -
           8737955-8738580,8738704-8738767,8739090-8739239,
           8739311-8739422,8739686-8739708
          Length = 324

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -3

Query: 424 NRSDSRSTFCFRRSASCSLSAVVSRYFRRHLAVSWGRHLADPRTIPPR 281
           +R  SRS + +RR  SCS    VS Y+RR  + S  R  +  R++ P+
Sbjct: 218 SRYRSRSPYRYRRERSCSYDHSVSPYYRRCYSPS-ARGRSYSRSVSPQ 264


>03_01_0366 -
           2848449-2849032,2849155-2849233,2849346-2849608,
           2849742-2849862
          Length = 348

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 298 ADRQDGGPKRRQDGAENTAKQQPKENMKPTDE 393
           A + DGG K+     E   K+QP E  KP +E
Sbjct: 98  AVKDDGGEKKDAQAKEEKGKKQPPEEKKPKEE 129


>10_08_0380 -
           17391427-17391435,17392026-17392097,17392215-17392310,
           17393355-17393480,17393783-17393840,17394234-17394289,
           17394889-17394966,17395053-17395157,17395285-17395393,
           17395572-17395705
          Length = 280

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 385 SASCSLSAVVSRYFRRHLAVSWGRHLADPRTIPPRTVGRPS 263
           +A  S +A  S + RR L+ S  RH+  P  + P  V RP+
Sbjct: 4   AAPASATAAASLFLRRSLSSSSPRHVFLPHWVAPIVVARPA 44


>01_06_1230 +
           35575840-35576020,35576122-35576170,35576365-35576441,
           35576883-35577145,35577241-35577387,35578569-35578766
          Length = 304

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 535 CCFRPRFDGIWRCTYNRRTLL*CLK 461
           C  R + DG+W C++N   LL C K
Sbjct: 74  CRSRGQADGLWSCSFNYNILLDCGK 98


>01_02_0039 -
           10490522-10490606,10490674-10490810,10491107-10491248,
           10491355-10491419,10491528-10491641,10491846-10492119,
           10492215-10492327,10492405-10492499,10492602-10492662,
           10492774-10493103
          Length = 471

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 706 QRRQAHLVHIKGEAFPCXYATKRWXQKNKLGF 801
           ++R+ H+V I G+ F   Y T     KN++GF
Sbjct: 436 KKRELHVVRILGDVFMAAYHTVFDFGKNRIGF 467


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,391,637
Number of Sequences: 37544
Number of extensions: 305711
Number of successful extensions: 1086
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)