Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0276
         (849 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61190.1 68418.m07676 zinc finger protein-related contains Pf...    30   2.2  
At5g61730.1 68418.m07746 ABC transporter family protein contains...    28   6.8  
At2g18490.1 68415.m02155 zinc finger (C2H2 type) family protein ...    28   9.0  

>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
           profile PF04396: Protein of unknown function DUF537,
           weak hit to PF00096: Zinc finger C2H2 type
          Length = 977

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 510 PSKRGLKQHS--KSCLDEGEKDRAGKFGCTQCSYRCQSPAILKIHER 644
           PSK  L++H+  K  + E       +F C  C+  CQS  +   H R
Sbjct: 342 PSKEVLEKHNMNKKVMIESRAQANAEFVCLMCNVVCQSQIVFNSHLR 388


>At5g61730.1 68418.m07746 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter
          Length = 940

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 322 KRRQDGAENTAKQQPKENMK--PTDENKMYYDYQIDYKTESV 441
           + ++DGA    K+  KE +K  PT+ENK +  + I +  E +
Sbjct: 758 ENKKDGAPEPLKRFFKERLKVEPTEENKAFMTFVIPHDKEQL 799


>At2g18490.1 68415.m02155 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 251

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +1

Query: 334 DGAENTAKQQPKENMKPTDENKMYYDYQIDYKTESVKLN---EDLTLNIKGEYVCYKCNA 504
           +G  +T   +P  +++ T E   Y D + + K++  + +     L     G Y C KCN+
Sbjct: 120 EGRSSTKIPKPTMSIEKTTE---YIDCEENEKSDDAQYDGRIHSLPYKKYGPYTCPKCNS 176

Query: 505 IFHRS 519
           IF  S
Sbjct: 177 IFDTS 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,553,429
Number of Sequences: 28952
Number of extensions: 234332
Number of successful extensions: 874
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)