Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0275
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   2.1  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   4.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   4.9  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    26   6.5  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   6.5  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    26   6.5  

>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 90  IDNMCEKRTRKIKKGSHITRLREXDVYSVCKGSLPRPLATSLTRRHAL 233
           I    + +   +KKGSH+T+  +   YS   G+LP P ++    R  L
Sbjct: 434 IQKKYQNQIENMKKGSHVTKSNQ---YSEMIGNLPYPTSSRKRTRSPL 478


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +3

Query: 171 SVCKGSLPRPLATSLTRRHALQRSTRPPKPRHLRARLEDRSA 296
           S   GS+P   A S            PPKPR L AR    S+
Sbjct: 201 SYASGSVPAATAASTASPVKKPPPPAPPKPRRLAARTSSNSS 242


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = +3

Query: 195 RPLATSLTRRHALQRSTRPPKPRHLRARLEDRSADAQEQIDPTEDH*SSKGNVTVHTVRN 374
           + L T + +R     S R  K R  R R    + D   +    E H S K   +  + RN
Sbjct: 148 KQLQTLMEKRKYSLDSDRKSKERRHRDRHHRSNQDRSRERSDNEQHSSDKREHSRRSYRN 207

Query: 375 EQP*EQEALHGTR 413
           ++   +E  H  R
Sbjct: 208 DRNNWRERTHNDR 220


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 256 NRVILELAWKTVALMHKNRLIQQKIIDLQKETSQYIQSVMSN-PENRRR 399
           NR+I     K    MH+ R I   +ID++   S  + S   N PE  +R
Sbjct: 169 NRIIKSPGIKEDDYMHRGRSISSPMIDVEHINSTAVPSKTKNLPEKPKR 217


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 249 PPKPRHLRARLEDRSADAQEQIDPTEDH*SSKGNVTVHTVRN 374
           PP        + DRS  A  Q  P + H SS+  VT   V+N
Sbjct: 376 PPTETKATTTVPDRSGLATNQPAPVDVHDSSEERVTREQVQN 417


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 319  QQKIIDLQKETSQYIQSVMSNPENRRRYMEHV 414
            + K+  +  ETS  +Q +  NPE  R+ ME++
Sbjct: 999  RSKLHGIWHETSYKMQEIRDNPECARQEMENI 1030


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 261 RHLRARLEDRSADAQEQIDPTED 329
           RHL + +E+  A  QE+  PT+D
Sbjct: 163 RHLASEIEEEFASRQEEEAPTDD 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,641
Number of Sequences: 5004
Number of extensions: 53370
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)