Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0275
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171...    30   2.2  
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    28   6.8  

>11_01_0219 -
           1710206-1710246,1710479-1710620,1710699-1710752,
           1710838-1710909,1711631-1711699,1711807-1711848,
           1711946-1712014,1712130-1712267,1712390-1712500,
           1712576-1712726,1713720-1713775,1714076-1714753
          Length = 540

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 23/69 (33%), Positives = 35/69 (50%)
 Frame = +3

Query: 189 LPRPLATSLTRRHALQRSTRPPKPRHLRARLEDRSADAQEQIDPTEDH*SSKGNVTVHTV 368
           L RPL   L R+  L+R  + P P     R E +SADA+E+ +  ED    +    +  V
Sbjct: 83  LSRPLIPHLRRQ--LRRLEQQP-PSQPPPRTESKSADAEEKSEEEEDGEGDEELEELDDV 139

Query: 369 RNEQP*EQE 395
            +E+  E+E
Sbjct: 140 DDEEESEEE 148


>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
            2353031-2353708,2353800-2353964,2354139-2354433,
            2354581-2354795,2354885-2355190,2355269-2355332,
            2355426-2355665,2355783-2355886
          Length = 1505

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 413  SVCTVHNLRN-LSY*QPRRMYRSKWSPKREPESILKVRKIYEQQKTKWRKSFVIYI 577
            SV  + NL+N +S  +     R     K++PE   K R + E+++ + R S  +Y+
Sbjct: 876  SVSNIDNLKNKVSNNEKPSSTRGIKEKKKKPEERKKKRSVQEEERERGRVSLQVYL 931


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,796,424
Number of Sequences: 37544
Number of extensions: 337099
Number of successful extensions: 886
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)