Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0275
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.75 
SB_15741| Best HMM Match : MANEC (HMM E-Value=2.7)                     29   3.0  
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              29   4.0  
SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)                  29   5.3  
SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)                  28   9.2  
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)                   28   9.2  
SB_44456| Best HMM Match : PQQ (HMM E-Value=0.73)                      28   9.2  
SB_3437| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
 Frame = +3

Query: 162 DVYSVCKGSLPRPLATSLTRRHALQRSTRPP-----KPRHLRARLEDRSADAQEQIDPTE 326
           D  SV   S P PL  S+  +    R+ RPP     KP   R R ED   +      P  
Sbjct: 279 DRSSVMMKSEPLPLGQSIVNKPTASRTARPPATILSKPIPARNRREDSDGEPSPPSSPVS 338

Query: 327 DH*SSKGNVTVHTVRNEQ 380
           +      ++T  ++R ++
Sbjct: 339 NEEDQGSSITRRSLREKR 356


>SB_15741| Best HMM Match : MANEC (HMM E-Value=2.7)
          Length = 263

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 424 RTNGRVPCSASCSQGCSLRTVCTVTFPFEDQ*SSV--GSICSC 302
           R  GRVP    C++ C +   C + F  ED+  SV   S  SC
Sbjct: 46  RDRGRVPGIKECAEVCCIAKECDLAFMLEDRCFSVTCSSSSSC 88


>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 32/118 (27%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
 Frame = +3

Query: 81  ILFIDNMCEKRTRKIKKGSHI-TRLREXDVYSVCKGSLPRPLATSLTRRHALQRSTRPPK 257
           I F  N   K     KK  +I  RL        C   +PR      +R+H L R+ R P 
Sbjct: 312 ISFTTNASSKDDATAKKIDNIFVRLPWLAYTRYCPPKIPRSKPRRGSRKHKLDRNPRIPF 371

Query: 258 PRHLRARLEDRSADAQEQIDPTEDH*SSKGNVTVHTVRNEQP*EQEALHGTRPFVRCT 431
                A LE +  D            SS  +VT H V+      +     T+ F  CT
Sbjct: 372 SASQLAALEAKFLDTHYLSSVEVRDLSSSLSVTEHRVKIWFQNRRAREKKTKEFCDCT 429


>SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)
          Length = 725

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = +1

Query: 271 ELAWKTVALMHKNRLIQQKIIDLQKETSQYIQSVMSNPENRRRYME 408
           E+  K + L H+N+ ++ +  D  +E +Q +QS++++   R+  +E
Sbjct: 609 EVKEKLMRLEHENKKLKAQKNDENEEQTQLLQSILNDANERKDQLE 654


>SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)
          Length = 943

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = +1

Query: 280 WKTVALMHKNRLIQQKIIDLQKETSQYIQSVMSNPENRRRYMEHV 414
           W+ + L H+ RL++Q+ ++ QK   +   ++ +  + RR+   H+
Sbjct: 745 WQDIVL-HRARLLKQQRLERQKSAKERRDTIDNQQKERRKKAGHI 788


>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
          Length = 634

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = +1

Query: 223 AMPSNGRQGRPNRVILELAWKTVALMHKNRLIQQKIIDLQKETSQYIQSVMSNPENRRRY 402
           A P N R    +   +++ W+ V L  +N +I    +    +T+  +Q++   PE R R 
Sbjct: 408 APPKNIRIRAESATSVKITWEDVPLPDRNGIILGFYLMFYYKTNTLLQTLHLAPEIRERV 467

Query: 403 MEHVRLY 423
              + +Y
Sbjct: 468 FSGLEVY 474


>SB_44456| Best HMM Match : PQQ (HMM E-Value=0.73)
          Length = 551

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 147 RLREXDVYSVCKGSLPRPLATSLTRRHALQRSTRPPKPR 263
           R  E  VY++ +G   RP  T+  R   L+R   PP+ R
Sbjct: 371 RNSEQVVYNLRRGRTIRPFPTNQQRTRQLRRQPSPPRVR 409


>SB_3437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/94 (22%), Positives = 37/94 (39%)
 Frame = +3

Query: 135 SHITRLREXDVYSVCKGSLPRPLATSLTRRHALQRSTRPPKPRHLRARLEDRSADAQEQI 314
           S  T+ +  D     K    RP  ++ T+R    ++ RP   R  + + +D+   A+   
Sbjct: 47  SRKTKTKRQDQDQAAKDQAARPRPSNKTKRQDQDQAARPRPSRKTKTKPQDQDQAARPSR 106

Query: 315 DPTEDH*SSKGNVTVHTVRNEQP*EQEALHGTRP 416
            P     S K      + R  +P +Q+     RP
Sbjct: 107 KPQAARPSRKPQDQAAS-RKTKPQDQDQAARPRP 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,126,511
Number of Sequences: 59808
Number of extensions: 422839
Number of successful extensions: 1061
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)