Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0275
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    28   8.0  
AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...    28   8.0  
AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever sho...    28   8.0  
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    28   8.0  
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    28   8.0  
AC006761-5|AAF60550.3|  425|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 506 IRAHALGSTLTCTFFSAANSLSCVGCAPYKRTCSM*RLLFSGLLIT 369
           + A A  ++  C F SAA SL C  C P  ++ +  R++++ LL T
Sbjct: 5   LAAPACAASSACCFGSAACSLCCSIC-PTTKSSTTTRIMYAFLLFT 49


>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 506 IRAHALGSTLTCTFFSAANSLSCVGCAPYKRTCSM*RLLFSGLLIT 369
           + A A  ++  C F SAA SL C  C P  ++ +  R++++ LL T
Sbjct: 5   LAAPACAASSACCFGSAACSLCCSIC-PTTKSSTTTRIMYAFLLFT 49


>AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform b protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 246 RPPKPRHLRARLEDRSADAQEQIDPTEDH*SS 341
           +P +PR  R   +DR  DA E     E+H SS
Sbjct: 391 KPKEPRRYRGEHDDRDDDASEYHGTLENHMSS 422


>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 246 RPPKPRHLRARLEDRSADAQEQIDPTEDH*SS 341
           +P +PR  R   +DR  DA E     E+H SS
Sbjct: 234 KPKEPRRYRGEHDDRDDDASEYHGTLENHMSS 265


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 246 RPPKPRHLRARLEDRSADAQEQIDPTEDH*SS 341
           +P +PR  R   +DR  DA E     E+H SS
Sbjct: 391 KPKEPRRYRGEHDDRDDDASEYHGTLENHMSS 422


>AC006761-5|AAF60550.3|  425|Caenorhabditis elegans Hypothetical
           protein Y41G9A.3 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 256 NRVILELAWKTVALMHKNRLIQQKIIDLQ 342
           +R IL   WK  AL+ K   + Q+++DL+
Sbjct: 250 HRRILHYIWKHCALLPKPECLSQRVVDLE 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,684
Number of Sequences: 27780
Number of extensions: 312823
Number of successful extensions: 912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)