Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0274
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 97 2e-21
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 47 3e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 2e-05
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 42 9e-05
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 29 0.95
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 28 1.3
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 28 1.7
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.2
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 3.8
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 5.0
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 8.8
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 8.8
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 97.1 bits (231), Expect = 2e-21
Identities = 48/131 (36%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKE--EADRCYRCNG 326
CY C GH ARECT+G + C++ N+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 327 TGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES--------ATQTCYNCNKSG 473
GH+ R+C SP+ CY C + GHIAR+C G++S + CY C G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYG 125
Query: 474 HISRNCPDGTK 506
H +R+C G K
Sbjct: 126 HQARDCTMGVK 136
Score = 90.2 bits (214), Expect = 3e-19
Identities = 42/99 (42%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +3
Query: 123 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFSXNRTGHFARDCKEE 299
S P + CYKC R GH AR+C G S G +R C++ GH ARDC
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 300 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 416
+CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 135 V-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 88.2 bits (209), Expect = 1e-18
Identities = 34/86 (39%), Positives = 46/86 (53%)
Frame = +3
Query: 234 RQREKCFSXNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 413
R +C++ GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 414 CPEGGRESATQTCYNCNKSGHISRNC 491
CP CY C + GHI+R+C
Sbjct: 73 CPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 87.0 bits (206), Expect = 3e-18
Identities = 52/143 (36%), Positives = 66/143 (46%), Gaps = 28/143 (19%)
Frame = +3
Query: 147 SVCYKCNRTGHFARECTQ------------GGVVSRD---SGFNRQREKCFSXNRTGHFA 281
S+CY CN+TGH A ECT+ G + RD S RQ +C+ R GH A
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIA 95
Query: 282 RDCKEEADR-------------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 422
RDC+ + CY C GH AR+C CY+C K GH + C +
Sbjct: 96 RDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---KCYSCGKIGHRSFECQQ 152
Query: 423 GGRESATQTCYNCNKSGHISRNC 491
S Q CY CN+ GHI+ NC
Sbjct: 153 A---SDGQLCYKCNQPGHIAVNC 172
Score = 31.9 bits (69), Expect = 0.10
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 135 AMSSSVCYKCNRTGHFARECT 197
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
Score = 29.9 bits (64), Expect = 0.41
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 473 PHLPQLSRRHQDCYVXGKPGHISREC 550
P +PQ +R CY G+ GH +REC
Sbjct: 7 PTVPQTTRPGPRCYNCGENGHQAREC 32
Score = 27.9 bits (59), Expect = 1.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 494 RRHQDCYVXGKPGHISREC 550
R+ +CY G+ GHI+R+C
Sbjct: 80 RQGAECYKCGRVGHIARDC 98
Score = 26.2 bits (55), Expect = 5.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 494 RRHQDCYVXGKPGHISRECDEARN 565
++ + CY G GH+ R+C + N
Sbjct: 55 QQEKTCYACGTAGHLVRDCPSSPN 78
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 509 CYVXGKPGHISRECDEA 559
CY GK GH S EC +A
Sbjct: 137 CYSCGKIGHRSFECQQA 153
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 47.2 bits (107), Expect = 3e-06
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Frame = +3
Query: 261 NRTGHFARDCKEEADRCYRCNGTGHIAREC----------------AQSPDEPSCYNCNK 392
+R +F D E+ C+ C G GHI+++C + P C NC
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGL 132
Query: 393 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 494
GHIA C E R+ + C C+ H S CP
Sbjct: 133 LGHIAARCSE-PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 37.1 bits (82), Expect = 0.003
Identities = 35/145 (24%), Positives = 48/145 (33%), Gaps = 26/145 (17%)
Frame = +3
Query: 144 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEAD 305
S VC+ C GH +++C T G + S +KC + GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 306 R----CYRCNGTGHIARECAQ----------------SPDEPSCYNCNKTGHIARNCPEG 425
R C C+ H + C S CYNC H +C
Sbjct: 146 RGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASDEHFGDDCTLP 205
Query: 426 GRESATQTCYNCNKSGHISRNCPDG 500
R + ++ C NCP G
Sbjct: 206 SRSNYPESTAFC------EANCPSG 224
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 494
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 33.1 bits (72), Expect = 0.044
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +3
Query: 237 QREKCFSXNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 371
+ + C + GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 429 RESATQTCYNCNKSGHISRNCPD 497
R+ Q C NC GH +CP+
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPE 326
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 41.9 bits (94), Expect = 9e-05
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEAD----RCYRC 320
C+ C + GH ++C + ++D+ CF H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKDNV-----SICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 321 NGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 443
+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 130 HENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +3
Query: 342 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 491
R Q + C+ C + GHI ++CPE + C+ C H C
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNAC 115
Score = 34.3 bits (75), Expect = 0.019
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Frame = +3
Query: 147 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKE-------EAD 305
S+C++C H C++ G + + KCF + GH + C++ +
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSGQCEQNPKGLYPKGG 151
Query: 306 RCYRCNGTGHIARECAQ 356
C C+ H+A++C Q
Sbjct: 152 CCKFCSSVHHLAKDCDQ 168
Score = 26.6 bits (56), Expect = 3.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +3
Query: 450 CYNCNKSGHISRNCPD 497
C+ C + GHI ++CP+
Sbjct: 79 CFACRQQGHIVQDCPE 94
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +3
Query: 123 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKE 296
SK + + C+ C+ GH + +C Q G + C + H A+DC +
Sbjct: 116 SKKGPLKFAKCFICHENGHLSGQCEQ-----NPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +2
Query: 479 LPQLSRRHQD--CYVXGKPGHISRECDEARN 565
L ++++R++D C+ + GHI ++C EA++
Sbjct: 67 LRRINQRNRDKFCFACRQQGHIVQDCPEAKD 97
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.95
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = +3
Query: 411 NCPEGGRESATQTCYN----CNKSGHISRNCP 494
+CP+G E T C+N C +G+IS P
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIP 97
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +3
Query: 426 GRESATQTCYNCNKSGHISRN--CP 494
GR+ T+ C NC + GH+ N CP
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTNKICP 963
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 354 QSPDEPSCYNCNKTGHIARN--CPEGGR 431
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 27.9 bits (59), Expect = 1.7
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 1/108 (0%)
Frame = +3
Query: 129 PIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFAR-DCKEEAD 305
P A +V K N GH E G V +S + K +R G F+R +
Sbjct: 384 PKAAPKAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSRLSFSRSSS 443
Query: 306 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 449
R + + H +PD P+ + ++ G+++ T+T
Sbjct: 444 RMKKGSKAKH-----EDAPDVPAIPHAYIADSSTKSSYRNGKKTPTRT 486
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 147 SVCYKCNRTGHFAREC 194
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 273 HFARDCKEEADRCYRCNGTGHIAREC 350
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 147 SVCYKCNRTGHFAREC 194
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 273 HFARDCKEEADRCYRCNGTGHIAREC 350
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = -1
Query: 459 SYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA-----PCRYICSNGQPL 295
S S ++S TP P SS+ P+ S TTA+ ++ LC Y C N Q
Sbjct: 843 SSSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGMQ---LCGSNYYDASSYYCDNDQLC 899
Query: 294 P 292
P
Sbjct: 900 P 900
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +3
Query: 342 RECAQSPDEPS-----CYNCNKTGHIARNCP 419
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 25.4 bits (53), Expect = 8.8
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +3
Query: 150 VCYKCNRTGHFAREC 194
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 423 GGRESATQTCYNCNKSG 473
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 459 SYSRSASQTPAPPRDSSVRCGPSCCSCN 376
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,791
Number of Sequences: 5004
Number of extensions: 46884
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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