Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0274
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 99 2e-21
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 89 2e-18
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 80 2e-15
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 71 6e-13
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 69 4e-12
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 60 2e-09
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 50 2e-06
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 49 3e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 49 3e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 49 3e-06
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 48 9e-06
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 48 9e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 47 1e-05
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 47 1e-05
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 45 6e-05
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 44 1e-04
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 38 0.007
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.007
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.038
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 34 0.089
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.15
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.20
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 33 0.20
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 33 0.20
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.27
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.27
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 33 0.27
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 33 0.27
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.36
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.62
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.62
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 31 0.62
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 31 0.62
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.62
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 31 0.83
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 31 0.83
At3g31950.1 68416.m04046 hypothetical protein 31 0.83
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 31 1.1
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 1.1
At5g47430.1 68418.m05844 expressed protein 30 1.4
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.4
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.4
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.4
At4g17410.1 68417.m02607 expressed protein 30 1.4
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.4
At2g42050.1 68415.m05200 hypothetical protein similar to SP|Q079... 30 1.4
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.4
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.4
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.9
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.5
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 2.5
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 2.5
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.5
At5g61670.2 68418.m07738 expressed protein 29 3.3
At5g61670.1 68418.m07737 expressed protein 29 3.3
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 29 3.3
At2g31850.1 68415.m03889 expressed protein 29 3.3
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 3.3
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 4.4
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 4.4
At4g06479.1 68417.m00885 hypothetical protein 29 4.4
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 4.4
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 5.8
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 5.8
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 5.8
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 28 5.8
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 5.8
At1g40080.1 68414.m04737 hypothetical protein member of hypothet... 28 5.8
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 28 7.7
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 28 7.7
At4g06526.1 68417.m00938 hypothetical protein 28 7.7
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 28 7.7
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 7.7
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 28 7.7
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 99 bits (238), Expect = 2e-21
Identities = 50/131 (38%), Positives = 66/131 (50%), Gaps = 18/131 (13%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDS--GFNRQREKCFSXNRTGHFARDCKEE--------- 299
CY C GH AR+CTQ V + D + C++ GHFARDC ++
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSG 225
Query: 300 ---ADRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRESA--TQTCYN 458
+ CY C G GHIAR+CA + +PS CY C +GH+AR+C + G CY
Sbjct: 226 GGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYK 284
Query: 459 CNKSGHISRNC 491
C K GH +R C
Sbjct: 285 CGKEGHFAREC 295
Score = 91.9 bits (218), Expect = 4e-19
Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEA---------- 302
CY C TGHFAR+CT G + + C++ GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 303 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIARNCPEGGRESA 440
D CY C GH AR+C Q +CY+C GHIAR+C +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC--ATKRQP 251
Query: 441 TQTCYNCNKSGHISRNC 491
++ CY C SGH++R+C
Sbjct: 252 SRGCYQCGGSGHLARDC 268
Score = 85.4 bits (202), Expect = 4e-17
Identities = 50/146 (34%), Positives = 64/146 (43%), Gaps = 31/146 (21%)
Frame = +3
Query: 147 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDC------------ 290
S CY C GH +++C GG +R E C++ TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 291 KEEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE---- 422
K D CY C GH+AR+C Q CY C GH AR+C +
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAA 219
Query: 423 GGRES---ATQTCYNCNKSGHISRNC 491
G S + TCY+C GHI+R+C
Sbjct: 220 GNVRSGGGGSGTCYSCGGVGHIARDC 245
Score = 54.4 bits (125), Expect = 8e-08
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 30/97 (30%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQ--------------------GGV--VSRDSGFNRQREK-CFSXN 263
CY C GHFAR+CTQ GGV ++RD RQ + C+
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 264 RTGHFARDCKEEA-------DRCYRCNGTGHIARECA 353
+GH ARDC + + CY+C GH AREC+
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEA 302
CY+C +GH AR+C Q G SG C+ + GHFAR+C A
Sbjct: 255 CYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 35.1 bits (77), Expect = 0.051
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 141 SSSVCYKCNRTGHFARECT 197
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 450 CYNCNKSGHISRNCPDG 500
CYNC + GHIS++C G
Sbjct: 102 CYNCGELGHISKDCGIG 118
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 491 SRRHQDCYVXGKPGHISRECDEARN 565
SR + CY G GH +R+C A N
Sbjct: 128 SRGGEGCYNCGDTGHFARDCTSAGN 152
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 89.4 bits (212), Expect = 2e-18
Identities = 49/138 (35%), Positives = 63/138 (45%), Gaps = 25/138 (18%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCK------------- 293
CY C GHFAR+C Q G + G R C+S GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 294 --EEADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRES 437
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GG 249
Query: 438 ATQTCYNCNKSGHISRNC 491
+ CY C +GH++R+C
Sbjct: 250 GGRACYECGGTGHLARDC 267
Score = 87.4 bits (207), Expect = 9e-18
Identities = 45/135 (33%), Positives = 61/135 (45%), Gaps = 22/135 (16%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDSGFNRQR---EKCFSXNRTGHFARDCKEEA------- 302
CY C GH A++C G +R G + + C+ GHFARDC++
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGG 222
Query: 303 -DRCYRCNGTGHIARECAQSPDEP------SCYNCNKTGHIARNCPEGGRESA-----TQ 446
CY C G GHIA+ C +CY C TGH+AR+C G S+ +
Sbjct: 223 GSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSN 282
Query: 447 TCYNCNKSGHISRNC 491
C+ C K GH +R C
Sbjct: 283 KCFICGKEGHFAREC 297
Score = 72.5 bits (170), Expect = 3e-13
Identities = 44/148 (29%), Positives = 61/148 (41%), Gaps = 31/148 (20%)
Frame = +3
Query: 141 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFSXNRTGHFARDCKEEAD- 305
S C+ C GH A++C G G S G R+ +C+ GHFARDC++
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG 151
Query: 306 ----------RCYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGHIARNC 416
CY C GH+A++C + CY C GH AR+C
Sbjct: 152 NSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Query: 417 PEGGRES---ATQTCYNCNKSGHISRNC 491
+ G + TCY C GHI++ C
Sbjct: 212 RQNGGGNVGGGGSTCYTCGGVGHIAKVC 239
Score = 54.8 bits (126), Expect = 6e-08
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Frame = +3
Query: 213 SRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNK 392
SR SG N CF+ GH A+DC + G G +S E CY C
Sbjct: 89 SRGSGGN-----CFNCGEVGHMAKDCDGGSGGKSFGGGGGR------RSGGEGECYMCGD 137
Query: 393 TGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGT 503
GH AR+C + GG + CY+C + GH++++C G+
Sbjct: 138 VGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGS 180
Score = 51.2 bits (117), Expect = 7e-07
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Frame = +3
Query: 147 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEE--------- 299
S CY C GH A+ CT + S G R C+ TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGR---ACYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 300 -ADRCYRCNGTGHIAREC 350
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/50 (46%), Positives = 28/50 (56%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEA 302
CY+C TGH AR+C + G S SG KCF + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 144 SSVCYKCNRTGHFARECT 197
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 411 NCPEGGRESATQTCYNCNKSGHISRNCPDGT 503
N E + C+NC + GH++++C G+
Sbjct: 83 NKKENSSRGSGGNCFNCGEVGHMAKDCDGGS 113
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 79.8 bits (188), Expect = 2e-15
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Frame = +3
Query: 147 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYRCNG 326
++C C R GHFAR+C+ V C + GH A +C E+ RC+ C
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCRE 100
Query: 327 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGHISRNC 491
GH+A C+ +E C++C K+GH AR+C R + C NC K GH++ +C
Sbjct: 101 PGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
Score = 76.6 bits (180), Expect = 2e-14
Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Frame = +3
Query: 147 SVCYKCNRTGHFARECTQGGVV--SRDSGF---NRQREK-CFSXNRTGHFARDCKEEADR 308
SVC C GH A ECT R+ G N E C S ++GH ARDC R
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 309 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 470
C C GH+A +C ++ +C NC +GHIAR+C C C+ S
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRND------PVCNICSIS 184
Query: 471 GHISRNCPDG 500
GH++R+CP G
Sbjct: 185 GHVARHCPKG 194
Score = 73.7 bits (173), Expect = 1e-13
Identities = 36/85 (42%), Positives = 44/85 (51%)
Frame = +3
Query: 237 QREKCFSXNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 416
Q C + R GHFARDC C C GHIA EC E C+NC + GH+A NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 417 PEGGRESATQTCYNCNKSGHISRNC 491
G C++C KSGH +R+C
Sbjct: 109 SNEG------ICHSCGKSGHRARDC 127
Score = 73.3 bits (172), Expect = 2e-13
Identities = 36/95 (37%), Positives = 55/95 (57%)
Frame = +3
Query: 141 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYRC 320
+ +C+ C ++GH AR+C+ SR +G R CF + GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCF---KQGHLAADCTNDK-ACKNC 162
Query: 321 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG 425
+GHIAR+C ++P C C+ +GH+AR+CP+G
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKG 194
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 150 VCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADR--CYRCN 323
VC C+ +GH AR C +G D G +R R+ +RD + + C+ C
Sbjct: 177 VCNICSISGHVARHCPKGDSNYSDRG-SRVRDGGMQRGGLSRMSRDREGVSAMIICHNCG 235
Query: 324 GTGHIAREC 350
G GH A EC
Sbjct: 236 GRGHRAYEC 244
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 71.3 bits (167), Expect = 6e-13
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Frame = +3
Query: 135 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFSXNRTGHFARDCKEEAD 305
A + + CYKC + GH+AR+CT V D+G + CF + GH++RDC ++
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQS- 287
Query: 306 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP--------EGGR---ESATQTC 452
+ + S CY C K GH +R+C + G+ S+T C
Sbjct: 288 -----GNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDC 342
Query: 453 YNCNKSGHISRNC 491
Y C K+GH SR+C
Sbjct: 343 YKCGKAGHWSRDC 355
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 141 SSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFSXNRTGHFARDCKEEA 302
SS CYKC + GH++R+CT Q SG + C+ + GH++RDC A
Sbjct: 302 SSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPA 359
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 108 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 245
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 506 DCYVXGKPGHISREC 550
DC+ GKPGH SR+C
Sbjct: 269 DCFKCGKPGHWSRDC 283
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 506 DCYVXGKPGHISREC 550
DCY GK GH SR+C
Sbjct: 341 DCYKCGKAGHWSRDC 355
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 68.5 bits (160), Expect = 4e-12
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Frame = +3
Query: 243 EKCFSXNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 395
E CF + H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 396 GHIARNCPEGGRESATQ--TCYNCNKSGHISRNCPD 497
GH +CP + T+ +C+ C GHIS+NCP+
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPE 169
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Frame = +3
Query: 144 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEAD------ 305
+ +C +C R GH + C + + + +++ C++ TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 306 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQ 446
C+ C G GHI++ C ++ P C C H+ ++CP+ + + Q
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESAQ 204
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 321 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPD 497
+ T H R P E C+ C+ HIA+ CPE + C C + GH +NCP+
Sbjct: 59 SSTRHPLRVPGMKPGE-GCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPE 116
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 59.7 bits (138), Expect = 2e-09
Identities = 50/170 (29%), Positives = 67/170 (39%), Gaps = 52/170 (30%)
Frame = +3
Query: 153 CYKCNRTGHFAREC-------TQGGVVSRDSGFNRQ---------RE-----KCFSXNRT 269
CY C +TGH A++C ++G V R F +E +C+
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSF 269
Query: 270 GHFARDCKEEADR------CYRCNGTGHIARECAQSPDEPS------------------C 377
GH C E + CYRC GH C + +E + C
Sbjct: 270 GHLC--CVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASEC 327
Query: 378 YNCNKTGHIARNCPEG-------GRESATQTCYNCNKSGHISRNCPDGTK 506
Y C + GH AR CP GRES T CY CN SGH +R CP+ ++
Sbjct: 328 YRCGEEGHFARECPNSSSISTSHGRESQT-LCYRCNGSGHFARECPNSSQ 376
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +3
Query: 249 CFSXNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 419
C+S GH + +C R C+ C H A++C++ D CY C KTGH A++CP
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCP 224
Query: 420 EGGRE-SATQTCYNCNKSGH 476
+ + S C C GH
Sbjct: 225 DKYKNGSKGAVCLRCGDFGH 244
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/77 (32%), Positives = 36/77 (46%)
Frame = +3
Query: 144 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYRCN 323
+S CY+C GHFAREC +S G + C+ N +GHFAR+C + R
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382
Query: 324 GTGHIARECAQSPDEPS 374
T + + + E S
Sbjct: 383 ETSTTSHKSRKKNKENS 399
Score = 52.8 bits (121), Expect = 2e-07
Identities = 39/129 (30%), Positives = 50/129 (38%), Gaps = 6/129 (4%)
Frame = +3
Query: 111 AQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDC 290
A+ F P A S CY C GH + C ++R+ CF H A+ C
Sbjct: 155 ARYFDPPDAGWVS-CYSCGEQGHTSFNCPTP---------TKRRKPCFICGSLEHGAKQC 204
Query: 291 KEEADRCYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCP-EGGRESATQT-C 452
+ D CY C TGH A++C S C C GH C E +E C
Sbjct: 205 SKGHD-CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQC 263
Query: 453 YNCNKSGHI 479
Y C GH+
Sbjct: 264 YICKSFGHL 272
Score = 48.0 bits (109), Expect = 7e-06
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 309 CYRCNGTGHIAREC-AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 485
CY C GH + C + C+ C H A+ C +G CY C K+GH ++
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKG------HDCYICKKTGHRAK 221
Query: 486 NCPDGTK 506
+CPD K
Sbjct: 222 DCPDKYK 228
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +3
Query: 141 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYRC 320
S ++CY+CN +GHFAREC VS+ R RE + +++ ++ E +
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSK-----RDRETSTTSHKSRKKNKENSEHDSTPHES 408
Query: 321 NG 326
NG
Sbjct: 409 NG 410
Score = 32.7 bits (71), Expect = 0.27
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 447 TCYNCNKSGHISRNCPDGTK 506
+CY+C + GH S NCP TK
Sbjct: 167 SCYSCGEQGHTSFNCPTPTK 186
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 491 SRRHQDCYVXGKPGHISREC 550
SR +CY G+ GH +REC
Sbjct: 321 SREASECYRCGEEGHFAREC 340
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Frame = +3
Query: 237 QREKCFSXNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 380
+ E C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 381 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 491
C + GH C +S + +C+ C + GH C
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +3
Query: 294 EEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARNCPEGGR-ESATQTCY 455
+EA+ C RC G GH C + CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 456 NCNKSGHISRNC 491
C + GH C
Sbjct: 81 RCGQLGHTGLAC 92
Score = 45.2 bits (102), Expect = 5e-05
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Frame = +3
Query: 144 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTG-HFARDCKEEADRCYRC 320
S C+ C R GHF +C V + ++C + + F + +EE +
Sbjct: 101 SPSCFICGREGHFEHQCHNSFSVCFPE--DSSEDECQGPDSSSVRFQENTREEEE----- 153
Query: 321 NGTGHIARECAQSPDEPS-CYN--CNKTGHIARNCPEGGRESATQT---CYNCNKSGHIS 482
GH +C PD S C+ + G I+ N +T CY C GHI+
Sbjct: 154 ---GHFEHQC---PDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIA 207
Query: 483 RNCPDGTK 506
R+CP+ ++
Sbjct: 208 RDCPNSSQ 215
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +3
Query: 141 SSSVCYKCN----RTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADR 308
SSSV ++ N GHF +C V +R+ E S N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 309 CYRCNGTGHIARECAQS 359
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 78 SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 212
S + +IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 172 SREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 300 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 458
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 360 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 506
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 246 KCFSXNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 362
+CF+ GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYR 317
C+ C GH+AR+CT G + KC+ GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 300 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 458
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 360 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 506
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 246 KCFSXNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 362
+CF+ GH+ARDC + ++CYRC GHI R C SP
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYR 317
C+ C GH+AR+CT G + KC+ GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 300 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 458
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 360 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 506
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 246 KCFSXNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 362
+CF+ GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYR 317
C+ C GH+AR+CT G + KC+ GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 47.6 bits (108), Expect = 9e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 306 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 416
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 246 KCFSXNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 362
+CF+ GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 360 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 491
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 144 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCK 293
S C+ C GH+AR+CT G + KC+ GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Frame = +3
Query: 393 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDG 500
T +R P G R++ ++ C+NC GH +R+C G
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAG 117
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 47.6 bits (108), Expect = 9e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 306 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 416
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 246 KCFSXNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 362
+CF+ GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 360 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 491
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 144 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCK 293
S C+ C GH+AR+CT G + KC+ GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Frame = +3
Query: 393 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDG 500
T +R P G R++ ++ C+NC GH +R+C G
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAG 76
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +3
Query: 309 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 488
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 489 CPDG 500
C G
Sbjct: 195 CTSG 198
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQ-GGVVSRDSGFNRQRE-----------KCFSXNRTGHFARDC 290
C+KC GH AREC+Q GG S G R C+S +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = +3
Query: 201 GGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 374
GG S G CF GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 375 CYNCNKTGHIARNCPEGG 428
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 37.5 bits (83), Expect = 0.010
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGG 206
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 396 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 500
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
Score = 28.3 bits (60), Expect = 5.8
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 509 CYVXGKPGHISRECDE 556
C+ G+PGH++REC +
Sbjct: 138 CFKCGEPGHMARECSQ 153
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 363 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPD 497
D +CY C K GH AR+C + +A TCY C++ GH S CP+
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPN 77
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +3
Query: 309 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 470
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 471 GH 476
H
Sbjct: 96 DH 97
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYRCNGTG 332
CYKC + GHFAR C VV++ + C+ + GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 333 H 335
H
Sbjct: 88 H 88
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 44.8 bits (101), Expect = 6e-05
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 1/110 (0%)
Frame = +3
Query: 168 RTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYRCNGTGHIARE 347
+TG F++ ++ RD + QR + AR E+ + + N R
Sbjct: 200 KTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRS 256
Query: 348 CAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCYNCNKSGHISRNCP 494
+ + C NC + GH CPE G + + C C GH R CP
Sbjct: 257 LSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCP 306
Score = 37.5 bits (83), Expect = 0.010
Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEAD--------- 305
C C + GH C + G + D F +C GH R C +
Sbjct: 266 CKNCGQEGHRRHYCPELGT-NADRKF-----RCRGCGGKGHNRRTCPKSKSIVTKGISTR 319
Query: 306 --RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHI 479
+C C GH +R C + P+ N + +G N E G T C C K GH
Sbjct: 320 YHKCGICGERGHNSRTCRK----PTGVNPSCSGE---NSGEDGVGKITYACGFCKKMGHN 372
Query: 480 SRNCP 494
R CP
Sbjct: 373 VRTCP 377
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +3
Query: 147 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFA--RDCKEEADRCYRC 320
S CYKC GH AR+C++GG G + G+ R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 321 NGTGHIAREC 350
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Frame = +3
Query: 201 GGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADRC------------YRCNGTGHIAR 344
GG R G R C+ GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 345 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 431
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +3
Query: 309 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-------TCYNCNK 467
CY+C GH+AR+C++ G GG + +CY+C +
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 468 SGHISRNCPDG 500
SGH +R+C G
Sbjct: 191 SGHFARDCTSG 201
Score = 37.5 bits (83), Expect = 0.010
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGG 206
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 32.7 bits (71), Expect = 0.27
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 494 RRHQDCYVXGKPGHISRECDE 556
R DCY G+PGH++R+C E
Sbjct: 126 RGGSDCYKCGEPGHMARDCSE 146
Score = 31.1 bits (67), Expect = 0.83
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 423 GGRESATQTCYNCNKSGHISRNCPDG 500
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 138 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 242
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 210 VSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYRCNGTGHIAREC 350
+ R +G+ + R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 363 DEPSCYNCNKTGHIARNCPEG 425
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 198 QGGVVSRDSGFNRQREKCFSXNRTGHFARDCK 293
+GG R G + KC+ GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 423 GGRESATQT--CYNCNKSGHISRNCPDG 500
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 138 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 242
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 210 VSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYRCNGTGHIAREC 350
+ R +G+ + R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 363 DEPSCYNCNKTGHIARNCPEG 425
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 198 QGGVVSRDSGFNRQREKCFSXNRTGHFARDCK 293
+GG R G + KC+ GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 423 GGRESATQT--CYNCNKSGHISRNCPDG 500
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Frame = +3
Query: 228 FNRQREKCFSXNRTGHFARDCKEEADR--CYRCNGTGHIARECAQSPDEPSCYNCNKTGH 401
F R+ E S +G A + +EE C+ C GH R+C + D +
Sbjct: 575 FARRLEAMKSIMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRD 627
Query: 402 IARNCP-EGGRESATQTCYNCNKSGHISRNCPD 497
+ +N GRE A+ C C + H + CP+
Sbjct: 628 LVQNISVRNGREEASSLCIRCFQLSHWAATCPN 660
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 242
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 31.5 bits (68), Expect = 0.62
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 423 GGRESATQTCYNCNKSGHISRNC 491
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.83
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 306 RCYRCNGTGHIAREC 350
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 375 CYNCNKTGHIARNCPEGG 428
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 246 KCFSXNRTGHFARDCK 293
KC+ TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.038
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 153 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 242
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 426 GRESATQTCYNCNKSGHISRNC 491
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 306 RCYRCNGTGHIAREC 350
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 375 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 494
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +3
Query: 201 GGVVSRDSGFNRQRE--KCFSXNRTGHFARDCK 293
GG D G R KC+ +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.3 bits (75), Expect = 0.089
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVSRDSG 227
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Frame = +3
Query: 216 RDSGFNRQREK---------CFSXNRTGHFARDCKEEADR 308
RD G++R R + CF + GHFAR+C E+ R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 482 PQLSRRHQDCYVXGKPGHISREC 550
P R DC+ GKPGH +REC
Sbjct: 111 PSGGRGGGDCFKCGKPGHFAREC 133
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +3
Query: 375 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 506
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 198 QGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYRCNGTGHIAREC 350
QGG RD+ +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGA-GRDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +3
Query: 375 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 500
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +3
Query: 309 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 443
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 381 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 506
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 362 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 505
G +VV LQ DGPH ++R G AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 237 QREKCFSXNRTGHFARDC 290
Q+EKCF +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 336 IARECAQSP-DEPSCYNCNKTGHIARNCP 419
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 7.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 153 CYKCNRTGHFAREC 194
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 306 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 428
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.27
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGG 206
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.36
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 366 EPSCYNCNKTGHIARNCPEGG 428
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 423 GGRESATQTCYNCNKSGHISRNCP 494
GG C+ C + GH +R+CP
Sbjct: 119 GGGRVGEDECFKCGRVGHWARDCP 142
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 243 EKCFSXNRTGHFARDC 290
++CF R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 195 TQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYRCNGTGHIAREC 350
+ G RDSG++ + F G + D C++C GH AR+C
Sbjct: 94 SHGSRGGRDSGYSIAGKGSFGGGGGG----GGRVGEDECFKCGRVGHWARDC 141
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 201 GGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEAD 305
GG SR G ++CF R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.62
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGG 206
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.83
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 366 EPSCYNCNKTGHIARNCPEGG 428
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 270 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 368
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 201 GGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEAD 305
GG SR G ++CF R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.62
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGG 206
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.83
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 366 EPSCYNCNKTGHIARNCPEGG 428
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 270 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 368
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.36
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 429 RESATQTCYNCNKSGHISRNCPD 497
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 372 SCYNCNKTGHIARNCPE 422
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.62
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 417 PEGGRESATQTCYNCNKSGHISRNC 491
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 1.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 150 VCYKCNRTGHFAREC 194
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 375 CYNCNKTGHIARNC 416
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 309 CYRCNGTGHIAREC 350
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 363 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 470
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 294 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 428
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 372 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 491
+CY+C + HI +CP + ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 31.5 bits (68), Expect = 0.62
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 432 ESATQTCYNCNKSGHISRNCP 494
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 153 CYKCNRTGHFARECTQGGVVS 215
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +3
Query: 375 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 488
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 366 EPSCYNCNKTGHIARNCPEGGRESATQ 446
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 447 TCYNCNKSGHISRNCP 494
TCY C + GHI++ CP
Sbjct: 226 TCYRCKQEGHIAKICP 241
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 362 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 505
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 362 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 505
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.83
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +3
Query: 315 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 482
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 483 RNCP 494
CP
Sbjct: 327 MYCP 330
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 30.7 bits (66), Expect = 1.1
Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 8/160 (5%)
Frame = +3
Query: 42 NYNLFVNS*DN*SLNDRYISVLSAQE--FSKPIAMSSSV----CYKCNRTGHFARECT-- 197
+Y L NS D+ +N+ Y S +S + V CY+C GH + C
Sbjct: 438 SYGLPKNSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIK 497
Query: 198 QGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSC 377
+S + Q + T + + + + NG + A P
Sbjct: 498 LQNTSHTNSTLDHQTVEAGPTQVTSYSLQKKTRDTEN----NGGSFMDESYATVPISIDV 553
Query: 378 YNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPD 497
N + G + + CY C + GH+S CP+
Sbjct: 554 TNGANDASLTSAVSTG--KIKKRNCYECGEKGHLSSACPN 591
Score = 28.3 bits (60), Expect = 5.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 444 QTCYNCNKSGHISRNCP 494
+ CY C + GH+S CP
Sbjct: 395 RVCYECGEKGHLSTACP 411
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 282 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 458
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 459 CNKS 470
C S
Sbjct: 181 CKSS 184
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 315 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 428
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 150 VCYKCNRTGHFARECTQGG 206
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 441 TQTCYNCNKSGHISRNCPD 497
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 375 CYNCNKTGHIARNCPEGG 428
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 123 SKPIAMSSSVCYKCNRTGHFAREC 194
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 303 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 476
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 477 ISRNC 491
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 150 VCYKCNRTGHFARECTQGG 206
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 336 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 488
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At2g42050.1 68415.m05200 hypothetical protein similar to SP|Q07981
FMRFamide-related peptides precursor HF-4 (HeptaFaRP)
{Helix aspersa}; contains Pfam profile PF03778: Protein
of unknown function (DUF321)
Length = 139
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 720 EXHSFSLWRGRXSASVL*SVIVCRAWRXXLIVRAWHHNI 604
E H F + G+ +VL + R WR +I++ W N+
Sbjct: 52 EKHDFEVLAGKHEFTVLAGKNILRFWRENMILKFWRENM 90
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 294 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 431
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 363 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 506
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 294 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 431
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 363 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 506
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 291 KEEADRCYRCNGTGHIARECAQSP 362
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 396 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 494
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 363 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 494
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 363 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 494
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 291 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 470
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 471 GHIS 482
G ++
Sbjct: 128 GSLT 131
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 291 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 446
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 447 TCYNCNKSGHISRNCP 494
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 291 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 446
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 447 TCYNCNKSGHISRNCP 494
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Frame = +3
Query: 294 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 464
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 465 KSGHISRNCP 494
G + CP
Sbjct: 256 GKGKLP--CP 263
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = -1
Query: 531 PGLPXT*QSWCRRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARP 361
P T + R+D G G + C S S P S SCC C++TA
Sbjct: 50 PAFVATRLNGLRQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADS 109
Query: 360 GS 355
GS
Sbjct: 110 GS 111
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 3.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 375 CYNCNKTGHIARNCP 419
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 138 MSSSVCYKCNRTGHFAREC 194
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
Score = 27.9 bits (59), Expect = 7.7
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = +3
Query: 450 CYNCNKSGHISRNCP 494
C++C++ GH ++NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 291 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 470
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 471 GHISRNCP 494
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 291 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 470
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 471 GHISRNCP 494
G + CP
Sbjct: 205 GKVM--CP 210
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +3
Query: 309 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 416
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 486 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 400
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 381 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 488
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 381 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 488
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 381 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 488
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 441 TQTCYNCNKSGHISRNCP 494
T+ C +C+ +GH SR CP
Sbjct: 2 TRRCSHCSNNGHNSRTCP 19
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 111 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 221
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 5.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 294 EEADRCYRCNGTGHIARECAQS 359
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 5.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 363 DEPSCYNCNKTGHIARNCPE 422
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
>At1g40080.1 68414.m04737 hypothetical protein member of
hypothetical protein common family
Length = 154
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Frame = +3
Query: 243 EKCFSXNRTGHFARDCKEEADRCYRCNGTGHIARECAQSP--DEPSCYNCNKTGHIARNC 416
+KC N +A+ ++ Y TG+ C + D+P + N +
Sbjct: 71 QKCLGANNP--YAKFVEKNKGLAYEST-TGYYQMRCRWNVTHDKPVFIDMNNEKRCIMHP 127
Query: 417 PEGGRESATQTCYNCNKSGHISRNC 491
P +TC+ C K GH + C
Sbjct: 128 PFQPGRMVRRTCHRCKKVGHRCKKC 152
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 81 LNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGV-VSRDS 224
L +R +SA A ++S C KC + GH+ EC V +SR S
Sbjct: 77 LGERKDKTMSASAVGSS-ASAASQCQKCFQAGHWTYECKNERVYISRPS 124
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 243 EKCFSXNRTGHFARDCKEEADRCYRCNGTGHIAREC 350
E+C + + DC +CY C G GH++ C
Sbjct: 347 EQCLHPPQAMPYMVDCA----KCYSCGGVGHVSMYC 378
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +3
Query: 309 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 419
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/76 (30%), Positives = 29/76 (38%)
Frame = +3
Query: 123 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFSXNRTGHFARDCKEEA 302
S+P + VC+ C GH C F REK NR + A D +
Sbjct: 618 SEPRRVFRPVCHHCGVVGHIRPRC-----------FRLLREK----NRLMN-AYDVRFHG 661
Query: 303 DRCYRCNGTGHIAREC 350
+CY GHI R C
Sbjct: 662 PKCYHYGVQGHIKRNC 677
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +3
Query: 303 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 473
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 474 HISRNC 491
IS C
Sbjct: 275 EISTPC 280
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 237 QREKCFSXNRTGHFARDCK 293
Q+E+CF + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,558,441
Number of Sequences: 28952
Number of extensions: 284635
Number of successful extensions: 1387
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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