Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0273
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 121 1e-28
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 93 4e-20
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 77 3e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 73 4e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 2e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 58 2e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 57 2e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 37 0.003
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 29 0.71
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 27 3.8
SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces... 26 5.0
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 26 5.0
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 25 8.7
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 25 8.7
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 121 bits (291), Expect = 1e-28
Identities = 54/84 (64%), Positives = 67/84 (79%)
Frame = +2
Query: 257 SMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIE 436
S+L+V YPMENG++R++E+M +WDYTF K+ +DP+ KILLTEPPMNP NREKM E
Sbjct: 63 SLLQVKYPMENGIIRDFEEMNQLWDYTFF-EKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 437 VMFEKYEFDSAYVAIQAVLTLYAQ 508
MFE+Y F YVAIQAVL+LYAQ
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQ 145
Score = 88.6 bits (210), Expect = 8e-19
Identities = 39/65 (60%), Positives = 46/65 (70%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSADFETVKMMKEKLCYI 729
THI PVYE L HL RLD+AGRD TRY + YAFN +ADFETV+ MKEKLCY+
Sbjct: 160 THIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYV 219
Query: 730 RYNIE 744
Y++E
Sbjct: 220 SYDLE 224
Score = 85.8 bits (203), Expect = 6e-18
Identities = 38/62 (61%), Positives = 48/62 (77%)
Frame = +3
Query: 87 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLDPCL 266
IV DNGTGFVK G+A NFP F FPS+VGRPI+RAE K G++ +KD+MVGDEA + L
Sbjct: 6 IVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLL 65
Query: 267 KL 272
++
Sbjct: 66 QV 67
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 93.1 bits (221), Expect = 4e-20
Identities = 41/82 (50%), Positives = 60/82 (73%)
Frame = +2
Query: 260 MLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEV 439
+L + YP+E+G+V NW+DM +W +TF +++ V P+E LLTE P+NP NREKM ++
Sbjct: 64 ILTLKYPIEHGIVNNWDDMEKIWHHTFY-NELRVAPEEHPCLLTEAPLNPKSNREKMTQI 122
Query: 440 MFEKYEFDSAYVAIQAVLTLYA 505
+FE + + YVAIQAVL+LYA
Sbjct: 123 IFETFNAPAFYVAIQAVLSLYA 144
Score = 71.3 bits (167), Expect = 1e-13
Identities = 31/65 (47%), Positives = 42/65 (64%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSADFETVKMMKEKLCYI 729
TH P+YE +ALPH RLD+AGRD+T Y R Y F+ +A+ E V+ +KEKLCY+
Sbjct: 160 THTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYV 219
Query: 730 RYNIE 744
+ E
Sbjct: 220 ALDFE 224
Score = 51.2 bits (117), Expect = 2e-07
Identities = 26/53 (49%), Positives = 33/53 (62%)
Frame = +3
Query: 87 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEA 245
+V DNG+G K GFAG + P +FPS+VGRP R + + KD VGDEA
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHHGIMVGMGQKDSYVGDEA 58
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 77.0 bits (181), Expect = 3e-15
Identities = 30/82 (36%), Positives = 51/82 (62%)
Frame = +2
Query: 260 MLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEV 439
+L++ P+E G+++NW DM +W Y + ++N P+E +LLTEPP+ +N+EK+ E
Sbjct: 68 LLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEY 127
Query: 440 MFEKYEFDSAYVAIQAVLTLYA 505
+E + ++Q VL LYA
Sbjct: 128 FYETLNVPALSFSLQPVLALYA 149
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = +3
Query: 87 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLDPCL 266
I DNG+GF+K GFAG + P +FP+ VGR I+ E + KD+ VG EA L L
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGR--IKHERVMPSSIQKDMFVGSEAQNLRGLL 69
Query: 267 KL 272
K+
Sbjct: 70 KI 71
Score = 49.2 bits (112), Expect = 6e-07
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSADFETVKMMKEKLCYI 729
TH P+Y+ F++P ++ +I GRD+T Y + SA+ E V+ +KEK CY+
Sbjct: 165 THSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYV 224
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 72.9 bits (171), Expect = 4e-14
Identities = 34/92 (36%), Positives = 53/92 (57%)
Frame = +2
Query: 269 VSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMFE 448
+ YP+ +G + NW+ M W + + +P++ LLTEPP+NP +NRE E+MFE
Sbjct: 90 LDYPIRHGQIENWDHMERFWQQSLF-KYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 449 KYEFDSAYVAIQAVLTLYAQD*YREWSWTRVT 544
+ Y+A+QAVL L A W+ ++VT
Sbjct: 149 SFNCAGLYIAVQAVLALAA-----SWTSSKVT 175
Score = 40.7 bits (91), Expect = 2e-04
Identities = 13/28 (46%), Positives = 24/28 (85%)
Frame = +3
Query: 87 IVCDNGTGFVKCGFAGSNFPAFIFPSMV 170
I+ DNGTG+ K G+AG++ P+++FP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSADFETVKMMKEKLCYI 729
THI PV E + + + + +AGRD+T + R + +T + +KE+ CY+
Sbjct: 191 THIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRN---EPDSSLKTAERIKEECCYV 247
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 60.9 bits (141), Expect = 2e-10
Identities = 33/86 (38%), Positives = 43/86 (50%)
Frame = +2
Query: 245 IQTGSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNRE 424
I+ GS P E V+ NW+ M V DYTF K+ +D E I +TEP NPT R
Sbjct: 75 IEVGSRSIARSPFERNVISNWDLMEQVLDYTF--LKLGIDRMEHPICMTEPLANPTYVRS 132
Query: 425 KMIEVMFEKYEFDSAYVAIQAVLTLY 502
M E++FE Y S I + + Y
Sbjct: 133 TMTELLFELYNAPSVAYGIDGLFSFY 158
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 57.6 bits (133), Expect = 2e-09
Identities = 25/81 (30%), Positives = 45/81 (55%)
Frame = +2
Query: 263 LEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVM 442
+EV NG++++WE + W+ K+ V+P E +++TEP NP R++++E
Sbjct: 66 MEVKNGKSNGIIQDWESTLYTWERGL-KEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAA 124
Query: 443 FEKYEFDSAYVAIQAVLTLYA 505
FE+ + Y+ QAV +A
Sbjct: 125 FEQLHVPAFYLTKQAVCVAFA 145
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 57.2 bits (132), Expect = 2e-09
Identities = 28/81 (34%), Positives = 42/81 (51%)
Frame = +2
Query: 263 LEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVM 442
+E+ + NG V NW+ +W Y ++ +P E IL+TEP NP +NR K +E M
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGL-EQQLKTNPLEHPILITEPFDNPPENRVKTLETM 121
Query: 443 FEKYEFDSAYVAIQAVLTLYA 505
FE + Y+A Q +A
Sbjct: 122 FESLRCPATYLAKQETCAAFA 142
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSADFETVKMMKEKLCYI 729
THI PV + +R+D+ G+ +T Y R Y N + V +KE +CY+
Sbjct: 168 THIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKY--NMMEETYIVNEIKESVCYV 225
Query: 730 RYNIE 744
N +
Sbjct: 226 SQNFK 230
Score = 33.1 bits (72), Expect = 0.043
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 284 ENGVVRNWEDMCHVWDYTF-GPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMFEKYEF 460
E G + +W VWD M + +LLT+P I+++FE+++F
Sbjct: 64 EKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEFQF 123
Query: 461 DS 466
D+
Sbjct: 124 DA 125
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 81 KVIVCDNGTGFVKCGFAG 134
K IV DNG +K GFAG
Sbjct: 6 KTIVLDNGAYHIKAGFAG 23
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 29.1 bits (62), Expect = 0.71
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 208 SPILFSARMIGLPTMEGNINAGKLLPAKPHFTKPVPLSQ 92
SP F +R IG+ T+ NI++GK P+ + P+S+
Sbjct: 534 SPKPFLSRQIGISTLSSNISSGKGTPSIQDYEIIKPISK 572
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +2
Query: 326 WDYTFGPS------KMNVDPKETKILLTEPPMNPTKNREKMIEVMFEKYEFDSAYVAIQA 487
W+ T PS K +PK TK+ LT P + M + + ++++ +A
Sbjct: 342 WNLTSTPSVFHYLIKAQAEPKTTKVTLTNLPYEFVRFNNSMHSIGDNNFSYNNS----EA 397
Query: 488 VLTLYAQ 508
VL ++AQ
Sbjct: 398 VLQIFAQ 404
>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 196
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -2
Query: 203 YFVFCAYDRPA----DHGREYKCRKIATSEATFHKAGTVVANDNFPSFVVH 63
Y + C ++ PA + G + R + + TFHKA + P+F+V+
Sbjct: 118 YMISCTWNAPAAAFEEVGNFFDGRGVDGTLLTFHKANQFLGMKPLPTFMVN 168
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 544 RHPSPRPLPISVLSVQREHRLYRNVSAVEL 455
RHP+ +PLP LS + L RN + +L
Sbjct: 309 RHPTSKPLPPKPLSRSKSSSLSRNQTRSQL 338
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 302 NWEDMCHVWDYTFGPSKMNVDPKETKILLTEP-PMNPTKNRE-KMIEV 439
+W+ C V +Y++ S ++ D T+ LT P P+ P+ N++ IEV
Sbjct: 335 SWKRWCRVKEYSWNTSVLS-DEALTRNSLTLPVPIKPSINKDISSIEV 381
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -1
Query: 669 SIPSEQKQFDEIPRDIPPGYVQPPGEMRQRELFIHGTNVRHTVTRVHDH 523
++ DE+ ++I P PPG R+R+ F ++V + DH
Sbjct: 97 AVAKASNSLDELAQNIIPA-PSPPGFNRKRKTFDEDSSVEMIRRAISDH 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,424
Number of Sequences: 5004
Number of extensions: 64967
Number of successful extensions: 220
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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