Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0273
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 155 3e-38
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 96 3e-20
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 96 3e-20
SB_56| Best HMM Match : Actin (HMM E-Value=0) 96 3e-20
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 96 3e-20
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 96 3e-20
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 1e-12
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 67 2e-11
SB_54| Best HMM Match : Actin (HMM E-Value=0) 64 1e-10
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 56 4e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 49 5e-06
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 47 1e-05
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 40 0.003
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 35 0.081
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 31 0.76
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 3.0
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 29 3.0
SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17) 29 5.3
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_50944| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_53106| Best HMM Match : PLAT (HMM E-Value=0) 28 9.3
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_40519| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 155 bits (377), Expect = 3e-38
Identities = 65/83 (78%), Positives = 76/83 (91%)
Frame = +2
Query: 260 MLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEV 439
MLEV+YPM+NG+VRNW+DM HVWDYTFG SKMN+DP+ TK+LLTEPP+NP KNREKMIEV
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 440 MFEKYEFDSAYVAIQAVLTLYAQ 508
MFE Y+F+ Y+AIQAVLTLYAQ
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQ 149
Score = 116 bits (280), Expect = 2e-26
Identities = 52/64 (81%), Positives = 57/64 (89%)
Frame = +3
Query: 63 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 242
MD G VIVCDNGTGFVKCG+AGSNFPA IFPSMVGRPIIR+ K+GDI+VKDLMVGDE
Sbjct: 1 MDANGNSVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDE 60
Query: 243 ASKL 254
AS+L
Sbjct: 61 ASQL 64
Score = 116 bits (278), Expect = 3e-26
Identities = 53/79 (67%), Positives = 58/79 (73%)
Frame = +1
Query: 508 GLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSAD 687
GL+ THICPVYE FALPHLTRRLDIAGRDIT+Y R YAFNH+AD
Sbjct: 150 GLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLRGYAFNHTAD 209
Query: 688 FETVKMMKEKLCYIRYNIE 744
FETV+MMKEKLCY+ YNIE
Sbjct: 210 FETVRMMKEKLCYVGYNIE 228
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/82 (51%), Positives = 61/82 (74%)
Frame = +2
Query: 260 MLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEV 439
+L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NREKM ++
Sbjct: 65 ILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 440 MFEKYEFDSAYVAIQAVLTLYA 505
MFE + + YVAIQAVL+LYA
Sbjct: 124 MFETFNSPAMYVAIQAVLSLYA 145
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/65 (47%), Positives = 42/65 (64%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSADFETVKMMKEKLCYI 729
TH P+YE +ALPH RLD+AGRD+T Y R Y+F +A+ E V+ +KEKLCY+
Sbjct: 161 THTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 220
Query: 730 RYNIE 744
+ E
Sbjct: 221 ALDFE 225
Score = 54.8 bits (126), Expect = 7e-08
Identities = 28/61 (45%), Positives = 37/61 (60%)
Frame = +3
Query: 63 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 242
M+D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 243 A 245
A
Sbjct: 59 A 59
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/82 (51%), Positives = 61/82 (74%)
Frame = +2
Query: 260 MLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEV 439
+L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NREKM ++
Sbjct: 64 ILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 440 MFEKYEFDSAYVAIQAVLTLYA 505
MFE + + YVAIQAVL+LYA
Sbjct: 123 MFETFNSPAMYVAIQAVLSLYA 144
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/65 (46%), Positives = 41/65 (63%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSADFETVKMMKEKLCYI 729
TH P+YE +ALPH RLD+AGRD+T Y R Y+F +A+ E V+ +KEKL Y+
Sbjct: 160 THTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYV 219
Query: 730 RYNIE 744
+ E
Sbjct: 220 ALDFE 224
Score = 52.4 bits (120), Expect = 4e-07
Identities = 26/53 (49%), Positives = 34/53 (64%)
Frame = +3
Query: 87 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEA 245
+V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDEA
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEA 58
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/82 (51%), Positives = 61/82 (74%)
Frame = +2
Query: 260 MLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEV 439
+L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NREKM ++
Sbjct: 64 ILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 440 MFEKYEFDSAYVAIQAVLTLYA 505
MFE + + YVAIQAVL+LYA
Sbjct: 123 MFETFNSPAMYVAIQAVLSLYA 144
Score = 70.9 bits (166), Expect = 1e-12
Identities = 31/65 (47%), Positives = 42/65 (64%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSADFETVKMMKEKLCYI 729
TH P+YE +ALPH RLD+AGRD+T Y R Y+F +A+ E V+ +KEKLCY+
Sbjct: 160 THTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 219
Query: 730 RYNIE 744
+ E
Sbjct: 220 ALDFE 224
Score = 52.8 bits (121), Expect = 3e-07
Identities = 28/61 (45%), Positives = 39/61 (63%)
Frame = +3
Query: 63 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 242
M+D+ ++V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MEDEVAALVV-DNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 57
Query: 243 A 245
A
Sbjct: 58 A 58
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/82 (51%), Positives = 61/82 (74%)
Frame = +2
Query: 260 MLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEV 439
+L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NREKM ++
Sbjct: 65 ILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 440 MFEKYEFDSAYVAIQAVLTLYA 505
MFE + + YVAIQAVL+LYA
Sbjct: 124 MFETFNSPAMYVAIQAVLSLYA 145
Score = 70.9 bits (166), Expect = 1e-12
Identities = 31/65 (47%), Positives = 42/65 (64%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSADFETVKMMKEKLCYI 729
TH P+YE +ALPH RLD+AGRD+T Y R Y+F +A+ E V+ +KEKLCY+
Sbjct: 161 THTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 220
Query: 730 RYNIE 744
+ E
Sbjct: 221 ALDFE 225
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/61 (45%), Positives = 36/61 (59%)
Frame = +3
Query: 63 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 242
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 243 A 245
A
Sbjct: 59 A 59
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/82 (51%), Positives = 61/82 (74%)
Frame = +2
Query: 260 MLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEV 439
+L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NREKM ++
Sbjct: 65 ILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 440 MFEKYEFDSAYVAIQAVLTLYA 505
MFE + + YVAIQAVL+LYA
Sbjct: 124 MFETFNSPAMYVAIQAVLSLYA 145
Score = 53.6 bits (123), Expect = 2e-07
Identities = 28/61 (45%), Positives = 36/61 (59%)
Frame = +3
Query: 63 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 242
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 243 A 245
A
Sbjct: 59 A 59
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 658 RXYAFNHSADFETVKMMKEKLCYIRYNIE 744
R Y+F +A+ E V+ +KEKLCY+ + E
Sbjct: 170 RGYSFTTTAEREIVRDIKEKLCYVALDFE 198
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/65 (47%), Positives = 42/65 (64%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSADFETVKMMKEKLCYI 729
TH P+YE +ALPH RLD+AGRD+T Y R Y+F +A+ E V+ +KEKLCY+
Sbjct: 123 THTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 182
Query: 730 RYNIE 744
+ E
Sbjct: 183 ALDFE 187
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/61 (45%), Positives = 38/61 (62%)
Frame = +3
Query: 63 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 242
MDD +++ DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MDDDVAALVI-DNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 57
Query: 243 A 245
A
Sbjct: 58 A 58
Score = 35.1 bits (77), Expect = 0.061
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +2
Query: 416 NREKMIEVMFEKYEFDSAYVAIQAVLTLYA 505
N + M ++MFE + + YVAIQAVL+LYA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYA 107
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 260 MLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNV 361
+L + YP+E+G+V NW+DM + TF M V
Sbjct: 64 ILTLKYPIEHGIVTNWDDMEKIMFETFNSPAMYV 97
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 66.9 bits (156), Expect = 2e-11
Identities = 29/60 (48%), Positives = 40/60 (66%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSADFETVKMMKEKLCYI 729
+H P+YE +ALPH RLD+AGRD+T Y R Y+F +A+ E V+ +KEKLCY+
Sbjct: 39 SHNVPIYEGYALPHAILRLDLAGRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYV 98
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 437 VMFEKYEFDSAYVAIQAVLTLYA 505
+MFE + + YVAIQAVL+LYA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYA 23
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 64.1 bits (149), Expect = 1e-10
Identities = 26/65 (40%), Positives = 41/65 (63%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSADFETVKMMKEKLCYI 729
+H PVY+ + LPH T+R+D+AGRD+T Y R Y+F +A+ + ++ +KE LCY
Sbjct: 2205 SHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQSTAEQQIIRDLKETLCYC 2264
Query: 730 RYNIE 744
+ E
Sbjct: 2265 AMDYE 2269
Score = 62.1 bits (144), Expect = 5e-10
Identities = 26/61 (42%), Positives = 42/61 (68%)
Frame = +2
Query: 323 VWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMFEKYEFDSAYVAIQAVLTLY 502
+W++ F ++ V ++ +LLTE P+NP NRE+M+++MFE + YVA+QAV+ LY
Sbjct: 2131 MWEHAF--DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 503 A 505
A
Sbjct: 2189 A 2189
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +3
Query: 66 DDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRP 179
+ G V+V DNG+GF K G + P +FP++VGRP
Sbjct: 2090 EQNGGTVVVIDNGSGFCKAGLSTDESPRVVFPAIVGRP 2127
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 55.6 bits (128), Expect = 4e-08
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSADFETVKMMKEK 717
+H P+YE FA+PH R DIAGRD++RY + F+ S++ E V+ +KE+
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +2
Query: 380 ILLTEPPMNPTKNREKMIEVMFEKYEFDSAYVAIQAVLTLYA 505
+LLTE P+NP +NREK EV FE + + ++++QAVL+LYA
Sbjct: 129 VLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYA 170
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 48.8 bits (111), Expect = 5e-06
Identities = 34/90 (37%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +3
Query: 63 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGD-IDVKDL-MVG 236
+D + IV DNG G K GFAG P I P++VG P R IGD ++VKD G
Sbjct: 695 LDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNP-QRFSMLIGDNVNVKDYKKYG 753
Query: 237 DEASKLDPCLKLATLWRMGSYVIGRTCATC 326
D A + L L + Y G T C
Sbjct: 754 DAAVAKSGVMHLNQL-SLSLYASGMTLGVC 782
Score = 35.1 bits (77), Expect = 0.061
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITR-YXXXXXXXRXYAFNHSADFETVKMMKEKLCY 726
T +YE L H + L+I G +T R + F S+ ++ V +KEK+CY
Sbjct: 790 TQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQRGHNFTSSSGWQIVNDIKEKICY 849
Query: 727 I 729
+
Sbjct: 850 L 850
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/76 (28%), Positives = 43/76 (56%)
Frame = +2
Query: 278 PMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMFEKYE 457
P+++G++ +W+ + DY + + + D +L++E N REK+ E+MFEKY
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKN-IKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYN 61
Query: 458 FDSAYVAIQAVLTLYA 505
+ ++ +VLT +A
Sbjct: 62 VPAFFLCKNSVLTAFA 77
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +1
Query: 550 THICPVYEEFALPHLTRRLDIAGRDITRYXXXXXXXRXYAFNHSADFETVKMMKEKLCYI 729
TH+ PV E + + + + IAGRDIT + R ET K +KE+ YI
Sbjct: 73 THVIPVAEGYVIGSCIKHIPIAGRDITFFVQQLLREREMGIPPEQSMETAKTIKERWGYI 132
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 34.7 bits (76), Expect = 0.081
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 87 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRP 179
+V D G+ K GFAG + P +FP +VGRP
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRP 1389
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 278 PMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTE 394
P + G + NW+ +WDYTFG K ++ +IL E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFG--KEGLEDAMDEILFEE 328
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 580 RTLHTRDKCASHRHPSPRPLPIS 512
RTLHT DK P PRP P++
Sbjct: 662 RTLHTEDKQQKKHVPPPRPPPVN 684
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 580 RTLHTRDKCASHRHPSPRPLPIS 512
RTLHT DK P PRP P++
Sbjct: 441 RTLHTEDKQQKKHVPPPRPPPVN 463
>SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)
Length = 534
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 242 SIQTGSMLEVSYPMENGVVRNWEDMC 319
S +TG +EV YPME V N + +C
Sbjct: 375 SSETGFFIEVKYPMETTVSGNVDHLC 400
>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 553 ASHRHPSPRPLPISVLSVQREHRLYRNVSA 464
+ HR P+ RP P S L+VQ+ R++SA
Sbjct: 757 SEHRPPAYRPSPPSYLAVQKSREGLRSLSA 786
>SB_50944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 265 KHGSSLDASSPTIKSLTSISPILFSARMIGLPTMEGNINAG 143
K G+S +SP++ L SP +F+A + TME I+ G
Sbjct: 228 KEGASSTETSPSMSRLKPASPPVFTALLPDGTTMEQKIHLG 268
>SB_53106| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1790
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -3
Query: 346 RTECVVPHVAHVLPITYDPILHRVANFKHGSSLDASSPTIKSLTSISPIL 197
R E V+P+V +L I YDP + A S+D + I P++
Sbjct: 1497 RREQVIPNVISLLRIDYDPTIRASAILLRNLSVDRENKRIIGEKGTGPLV 1546
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -3
Query: 568 TRDKCASHRHPSPRPLPISVLSVQREHRLYRNVSAVELV 452
T ++C S + PS P P + + ++ L+RN +++ V
Sbjct: 392 TGEECVSPQSPSKHPEPAPIANGLQDSELFRNQQSLQYV 430
>SB_40519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = -3
Query: 346 RTECVVPHVAHVLPITYDPILHRVANFKHGSSLDASSPTIKSLTSISPILFSARMIG 176
R ECVV H PI + ++ V SS+DAS K T+ +P++ A +G
Sbjct: 364 RLECVVKTSHHHEPIRHIVVVRPVVCPTTTSSVDASIAQRKKPTTTAPLVPQAVTMG 420
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,462,616
Number of Sequences: 59808
Number of extensions: 508134
Number of successful extensions: 1518
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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