Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0272
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    29   0.053
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   8.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 28.7 bits (61), Expect = 0.053
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +3

Query: 540  PSWTCTEAV----TYTSPWPLPSARPYQV*WLPCTTSLSTRPFTTH 665
            P WT   +     T TSPW   +         P TTS +TRP TT+
Sbjct: 1033 PDWTTKPSTWWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTN 1078


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 255 YNLVQATGLRASSGAXPSPTNVNTSNRSEYVSDTDKSKRTIAATSLI 115
           Y LV+A G      A   P N     RS+  S     K+T+A   ++
Sbjct: 140 YTLVKAYGFDGLDLAWEFPENKPKKIRSKLGSIWHSVKKTVAGDKVL 186


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 257 RIIWYKPRDYARPAAPSR 204
           R ++YKP D  RP   +R
Sbjct: 497 RFLFYKPEDIFRPNTYNR 514


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,554
Number of Sequences: 336
Number of extensions: 2816
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)