Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0272
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    30   0.41 
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    27   3.8  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   5.0  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   8.8  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -1

Query: 237  TGLRASSGAXPSPTNVNTSNRSEYVSDTDKSKRTIAATSLIR 112
            +GL +SS   PS T   + + SE  S +  SKR+ ++TSL++
Sbjct: 991  SGLTSSSSTIPSSTR--SESNSESASTSSASKRSSSSTSLVQ 1030


>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 672 CTTSLFEKLKLWGRDGRISRQR 737
           C  S FEK+ LW RD   S ++
Sbjct: 101 CINSTFEKVMLWNRDNMRSSEK 122


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/42 (47%), Positives = 23/42 (54%)
 Frame = +3

Query: 561 AVTYTSPWPLPSARPYQV*WLPCTTSLSTRPFTTHRHCTTSL 686
           AVT  +P PLPS+ P Q        SLSTR   T +  TTSL
Sbjct: 561 AVTPQAPSPLPSSNPSQA--SLTEESLSTRSSPT-KPSTTSL 599


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 222 SSGAXPSPTNVN-TSNRSEYVSDTDKSKRTIAA 127
           SSG+ P  T  N TSN S   +++DKS RTI +
Sbjct: 131 SSGSPPDTTRRNSTSNLSSVSTNSDKS-RTIGS 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,257
Number of Sequences: 5004
Number of extensions: 48959
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)