Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0272
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0651 - 19594149-19594507,19595165-19595219                       28   6.9  
10_07_0016 + 11826066-11826773                                         28   6.9  
02_05_0856 - 32272757-32273494,32273578-32273866,32273961-322743...    28   6.9  
01_06_1762 - 39716723-39717016,39717256-39717332,39717452-397174...    28   6.9  
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    28   9.2  

>10_08_0651 - 19594149-19594507,19595165-19595219
          Length = 137

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 252 YTDIIGFRVRTL*KSTPPRNHRARAPSNP---GFI*INRNESD 371
           + DI+ F V  L  S+PP + +A AP+     GFI I+ N  D
Sbjct: 57  FIDIVVFVVGGLGGSSPPADRQAAAPAKAPPRGFIYIDSNSDD 99


>10_07_0016 + 11826066-11826773
          Length = 235

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 596 RRKRPRTRVGDRLRASPARTGKARSR 519
           RR  PR R+  RLR  PAR  ++R R
Sbjct: 196 RRPPPRPRLASRLRPPPARRRRSRYR 221


>02_05_0856 -
           32272757-32273494,32273578-32273866,32273961-32274312,
           32275232-32275850
          Length = 665

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 602 PSRRKRPRTRVGDRLRASPARTGKARSRL 516
           PSRR  P   V DR+RA    TG+ R R+
Sbjct: 109 PSRRPHPPRAVVDRVRAVLLDTGRGRCRV 137


>01_06_1762 -
           39716723-39717016,39717256-39717332,39717452-39717498,
           39717953-39718053,39718271-39718360,39718556-39720133
          Length = 728

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 449 SDSRHQHSSPGVQGGAGG 502
           S + H H +PG QGG GG
Sbjct: 7   SSAPHSHGNPGKQGGGGG 24


>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 715 SLPHSFNFSKRLVVQWRCVVK 653
           S+P SF  S  L +QW+CV++
Sbjct: 888 SVPSSFQLSLTLCLQWKCVLE 908


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,113,141
Number of Sequences: 37544
Number of extensions: 397463
Number of successful extensions: 1312
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)