Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0272
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38971| Best HMM Match : SRCR (HMM E-Value=0)                        30   2.3  
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_12046| Best HMM Match : fn3 (HMM E-Value=0)                         30   2.3  
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_1963| Best HMM Match : rve (HMM E-Value=0.022)                      29   5.4  
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)                28   7.1  

>SB_38971| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2436

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 40/125 (32%), Positives = 57/125 (45%)
 Frame = -3

Query: 691  SKRLVVQWRCVVKGRVLRLVVQGSHQT*YGRADGSGHGLV*VTASVQVQLGQAKPVLA*R 512
            S  ++VQW  V K   L  V++G   T  G+ DGS    V +  SV+V LG   P    +
Sbjct: 2167 STAVIVQWTSVSKNH-LNGVLKGYVVTYSGQFDGSRELSVRIN-SVRVVLGGISPGFEYK 2224

Query: 511  LIPAASASLYTRR*MLMPAVTSGLKSERL*VASTTA*CVRFSANFTRSDSFLFIQIKPGL 332
            +  AA    +TR       +  G +S    V  TTA     +A+ T   + LF  I PG+
Sbjct: 2225 VQVAA----FTR-------IGDGPRSAA--VLFTTAESPNKAASRTERKNILFQYIAPGV 2271

Query: 331  DGALA 317
             G +A
Sbjct: 2272 GGFIA 2276


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 579 PWPLPSARPYQV*WLPCTTSLSTRP---FTTHRHCTTS 683
           PW   S  P ++ ++P    L+T+P   FTTH HC  S
Sbjct: 554 PWRF-SVVPKKIPYIPALRPLTTKPHKEFTTHLHCILS 590


>SB_12046| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 652

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 40/125 (32%), Positives = 57/125 (45%)
 Frame = -3

Query: 691 SKRLVVQWRCVVKGRVLRLVVQGSHQT*YGRADGSGHGLV*VTASVQVQLGQAKPVLA*R 512
           S  ++VQW  V K   L  V++G   T  G+ DGS    V +  SV+V LG   P    +
Sbjct: 383 STAVIVQWTSVSKNH-LNGVLKGYVVTYSGQFDGSRELSVRIN-SVRVVLGGISPGFEYK 440

Query: 511 LIPAASASLYTRR*MLMPAVTSGLKSERL*VASTTA*CVRFSANFTRSDSFLFIQIKPGL 332
           +  AA    +TR       +  G +S    V  TTA     +A+ T   + LF  I PG+
Sbjct: 441 VQVAA----FTR-------IGDGPRSAA--VLFTTAESPNKAASRTERKNILFQYIAPGV 487

Query: 331 DGALA 317
            G +A
Sbjct: 488 GGFIA 492


>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 213 AXPSPTNVNTSNRSEYVSDTDKSKRTIAATS 121
           A P+PT  NTS+ +   + TD S  TIA TS
Sbjct: 107 ACPTPTRANTSSYTIPYASTDASTYTIANTS 137


>SB_1963| Best HMM Match : rve (HMM E-Value=0.022)
          Length = 931

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/27 (59%), Positives = 16/27 (59%)
 Frame = -2

Query: 554 ASPARTGKARSRLAAHSSRQRLLVHPE 474
           ASP RTG  RSR A  SSR     HPE
Sbjct: 417 ASPQRTGHTRSRFARPSSRY-ACEHPE 442


>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
          Length = 660

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 602 PSRRKRPRTRVGDRLRASPART-GKARSRLAA 510
           PSR   PR+R G R R  P  T  +A SR +A
Sbjct: 566 PSRTSTPRSRAGSRTRTPPTPTSSRASSRGSA 597


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,020,910
Number of Sequences: 59808
Number of extensions: 406215
Number of successful extensions: 1072
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)