Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0272
(753 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC026171-1|AAH26171.1| 778|Homo sapiens FAM47A protein protein. 33 1.1
AL591625-1|CAI41438.1| 791|Homo sapiens family with sequence si... 33 1.1
X87248-1|CAA60698.1| 341|Homo sapiens HP8 peptide protein. 31 4.5
D16105-1|BAA03679.1| 864|Homo sapiens leukocyte tyrosine kinase... 31 5.9
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 31 5.9
BC045607-1|AAH45607.1| 476|Homo sapiens LTK protein protein. 31 5.9
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 31 5.9
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 31 5.9
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 31 5.9
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 31 5.9
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 31 5.9
>BC026171-1|AAH26171.1| 778|Homo sapiens FAM47A protein protein.
Length = 778
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -2
Query: 596 RRKRPRTRVGDRLRASPARTGKARSRLAAHSSRQRLLVHPE 474
R + +TR G LR+ P+ TG +R RLA +R+ +H E
Sbjct: 338 RLEHSKTRRGSSLRSEPSETGVSRLRLAPPKTRRGSSLHAE 378
>AL591625-1|CAI41438.1| 791|Homo sapiens family with sequence
similarity 47, member A protein.
Length = 791
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -2
Query: 596 RRKRPRTRVGDRLRASPARTGKARSRLAAHSSRQRLLVHPE 474
R + +TR G LR+ P+ TG +R RLA +R+ +H E
Sbjct: 338 RLEHSKTRRGSSLRSEPSETGVSRLRLAPPKTRRGSSLHAE 378
>X87248-1|CAA60698.1| 341|Homo sapiens HP8 peptide protein.
Length = 341
Score = 31.1 bits (67), Expect = 4.5
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Frame = -2
Query: 620 PSDLIWPS-------RRKRPRTRVGDRL-RASPARTGKARSRLAA 510
PS WP+ RR+RPRTR R R P RT +RSR AA
Sbjct: 156 PSSWRWPACSLTSRRRRRRPRTRTRTRRPRTWPPRTCSSRSRTAA 200
>D16105-1|BAA03679.1| 864|Homo sapiens leukocyte tyrosine kinase
protein.
Length = 864
Score = 30.7 bits (66), Expect = 5.9
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +2
Query: 383 GRESYALSRSRRDSQAL--RLETRSDSRHQHSSPGVQGGAGGWNE--PLSENGLCLSE 544
G +Y R R +QA +LE RS++ G GG GGW P + G L E
Sbjct: 235 GGRAYLRPRDRGRTQASPEKLENRSEAPGSGGRGGAAGGGGGWTSRAPSPQAGRSLQE 292
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 30.7 bits (66), Expect = 5.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 599 SRRKRPRTRVGDRLRASPARTGKARSRLAAHSSRQR 492
SR + P R G +PAR G++RSR A R R
Sbjct: 635 SRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSR 670
>BC045607-1|AAH45607.1| 476|Homo sapiens LTK protein protein.
Length = 476
Score = 30.7 bits (66), Expect = 5.9
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +2
Query: 383 GRESYALSRSRRDSQAL--RLETRSDSRHQHSSPGVQGGAGGWNE--PLSENGLCLSE 544
G +Y R R +QA +LE RS++ G GG GGW P + G L E
Sbjct: 235 GGRAYLRPRDRGRTQASPEKLENRSEAPGSGGRGGAAGGGGGWTSRAPSPQAGRSLQE 292
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 30.7 bits (66), Expect = 5.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 599 SRRKRPRTRVGDRLRASPARTGKARSRLAAHSSRQR 492
SR + P R G +PAR G++RSR A R R
Sbjct: 635 SRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSR 670
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 30.7 bits (66), Expect = 5.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 599 SRRKRPRTRVGDRLRASPARTGKARSRLAAHSSRQR 492
SR + P R G +PAR G++RSR A R R
Sbjct: 635 SRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSR 670
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 30.7 bits (66), Expect = 5.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 599 SRRKRPRTRVGDRLRASPARTGKARSRLAAHSSRQR 492
SR + P R G +PAR G++RSR A R R
Sbjct: 600 SRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSR 635
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 30.7 bits (66), Expect = 5.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 599 SRRKRPRTRVGDRLRASPARTGKARSRLAAHSSRQR 492
SR + P R G +PAR G++RSR A R R
Sbjct: 425 SRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSR 460
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 30.7 bits (66), Expect = 5.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 599 SRRKRPRTRVGDRLRASPARTGKARSRLAAHSSRQR 492
SR + P R G +PAR G++RSR A R R
Sbjct: 683 SRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSR 718
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,839,607
Number of Sequences: 237096
Number of extensions: 1914981
Number of successful extensions: 5029
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5029
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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