Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0272
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53153-6|AAT81184.1|  638|Caenorhabditis elegans Germinal center...    29   3.5  
U53153-5|AAK77641.1|  651|Caenorhabditis elegans Germinal center...    29   3.5  
U53153-4|AAK77642.2|  650|Caenorhabditis elegans Germinal center...    29   3.5  
U53153-3|AAC69038.1|  653|Caenorhabditis elegans Germinal center...    29   3.5  
Z75543-7|CAA99868.2|  139|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF016449-10|AAG24001.2|  353|Caenorhabditis elegans Serpentine r...    28   8.2  

>U53153-6|AAT81184.1|  638|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform d protein.
          Length = 638

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +2

Query: 389 ESYALSRSRRD-SQALRLETRSDSRHQH---SSPGVQGGAGGWNEPLSENG 529
           +S+ L R  R  S+ +  +      +QH   SS GVQGG+GG  E ++ +G
Sbjct: 441 QSWELERGNRPMSERVSSQVSPSKYNQHRTSSSNGVQGGSGGRREYINGSG 491


>U53153-5|AAK77641.1|  651|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform b protein.
          Length = 651

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +2

Query: 389 ESYALSRSRRD-SQALRLETRSDSRHQH---SSPGVQGGAGGWNEPLSENG 529
           +S+ L R  R  S+ +  +      +QH   SS GVQGG+GG  E ++ +G
Sbjct: 454 QSWELERGNRPMSERVSSQVSPSKYNQHRTSSSNGVQGGSGGRREYINGSG 504


>U53153-4|AAK77642.2|  650|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform c protein.
          Length = 650

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +2

Query: 389 ESYALSRSRRD-SQALRLETRSDSRHQH---SSPGVQGGAGGWNEPLSENG 529
           +S+ L R  R  S+ +  +      +QH   SS GVQGG+GG  E ++ +G
Sbjct: 453 QSWELERGNRPMSERVSSQVSPSKYNQHRTSSSNGVQGGSGGRREYINGSG 503


>U53153-3|AAC69038.1|  653|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform a protein.
          Length = 653

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +2

Query: 389 ESYALSRSRRD-SQALRLETRSDSRHQH---SSPGVQGGAGGWNEPLSENG 529
           +S+ L R  R  S+ +  +      +QH   SS GVQGG+GG  E ++ +G
Sbjct: 456 QSWELERGNRPMSERVSSQVSPSKYNQHRTSSSNGVQGGSGGRREYINGSG 506


>Z75543-7|CAA99868.2|  139|Caenorhabditis elegans Hypothetical
           protein K01D12.8 protein.
          Length = 139

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 383 GRESYALSRSRRDSQALRLETRSDSRHQHSSPGVQGGAGG 502
           G   +  SR +RDS +    + S+S     S G +GG GG
Sbjct: 40  GTSDFDSSRKKRDSSSSSSSSSSESGGSGGSGGGKGGKGG 79


>Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical
           protein F31F6.5 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -1

Query: 222 SSGAXPSPTNVNTSNRSEYVSDTD--KSKRTIAA 127
           S  A P+P N  +S+ S + SD+D   SK+TI A
Sbjct: 469 SRSASPAPFNYLSSSNSSFSSDSDSFSSKKTIPA 502


>AF016449-10|AAG24001.2|  353|Caenorhabditis elegans Serpentine
           receptor, class t protein5 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 739 DRCLEIRPSLPHSFNFSKRLVV 674
           DRC E+ P  P +F F KR+ +
Sbjct: 133 DRCAEVDPHFPLAFLFGKRIFI 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,875,908
Number of Sequences: 27780
Number of extensions: 285192
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)