Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0272
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24800.1 68418.m02928 bZIP transcription factor family protei...    29   4.4  
At4g00340.1 68417.m00045 S-locus glycoprotein family protein / c...    28   7.7  

>At5g24800.1 68418.m02928 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H2
           GI:10954096
          Length = 277

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
 Frame = +2

Query: 218 LDARNPVACTR--LYGYHRISCTNAVKVNSSEESSCKSAV*SRLYL--NKQK*VRPRKIG 385
           L A +PV+  +  + G  R + + +  VNS +E +   A  S +    N  K +R     
Sbjct: 71  LSADSPVSANKPEVRGGVRRTTSGSSHVNSDDEDAETEAGQSEMTNDPNDLKRIRRMNSN 130

Query: 386 RESYALSRSRRDSQALRLETRSDS 457
           RES   SR R+    + LET+ DS
Sbjct: 131 RESAKRSRRRKQEYLVDLETQVDS 154


>At4g00340.1 68417.m00045 S-locus glycoprotein family protein /
           curculin-like (mannose-binding) lectin family protein /
           PAN domain-containing protein contains Pfam profiles:
           PF01453 lectin (probable mannose binding), PF00954
           S-locus glycoprotein family, PF00024 PAN domain
          Length = 402

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 231 LRASSGAXPSPTNVNTSNRSEYVSDTDKSKRTIAATSLI 115
           L  S  + P+PT+V  +NR   VSD D S   + +T  +
Sbjct: 56  LGISYASMPTPTHVWVANRIRPVSDPDSSTLELTSTGYL 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,842
Number of Sequences: 28952
Number of extensions: 277251
Number of successful extensions: 727
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)