Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0271
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 169 3e-43
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 97 2e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 97 2e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 87 2e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 6e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 60 4e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 48 1e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 40 5e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 39 6e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 32 0.092
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 30 0.37
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.37
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 29 0.49
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 29 0.65
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.5
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 3.5
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 4.6
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 6.1
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 8.0
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 8.0
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 8.0
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 25 8.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 169 bits (411), Expect = 3e-43
Identities = 76/85 (89%), Positives = 79/85 (92%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEXHPVLLTEAPLNPKANREX 433
+SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPE HP LLTEAPLNPK+NRE
Sbjct: 59 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREK 118
Query: 434 MTQIMFETFNTPAMYVAIQAVLSLY 508
MTQI+FETFN PA YVAIQAVLSLY
Sbjct: 119 MTQIIFETFNAPAFYVAIQAVLSLY 143
Score = 122 bits (293), Expect = 7e-29
Identities = 53/60 (88%), Positives = 59/60 (98%)
Frame = +3
Query: 84 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAK 263
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEA++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 113 bits (271), Expect = 3e-26
Identities = 51/56 (91%), Positives = 54/56 (96%)
Frame = +1
Query: 511 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYFMKILTERGYSF 678
SGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDY MKIL ERGY+F
Sbjct: 145 SGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTF 200
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 97.5 bits (232), Expect = 2e-21
Identities = 40/82 (48%), Positives = 61/82 (74%)
Frame = +2
Query: 263 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEXHPVLLTEAPLNPKANREXMTQ 442
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANRE M +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 443 IMFETFNTPAMYVAIQAVLSLY 508
MFE + +YVAIQAVLSLY
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLY 143
Score = 71.7 bits (168), Expect = 9e-14
Identities = 29/56 (51%), Positives = 42/56 (75%)
Frame = +1
Query: 514 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYFMKILTERGYSFH 681
G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T Y + +L +GY+F+
Sbjct: 146 GLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFN 201
Score = 54.8 bits (126), Expect = 1e-08
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +3
Query: 90 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEARA 260
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 97.1 bits (231), Expect = 2e-21
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +2
Query: 275 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEXHPVLLTEAPLNPKANREXMTQIMFE 454
+L YPI HG + NWD ME+ W + + LR PE H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 455 TFNTPAMYVAIQAVLSL 505
+FN +Y+A+QAVL+L
Sbjct: 149 SFNCAGLYIAVQAVLAL 165
Score = 55.6 bits (128), Expect = 7e-09
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +1
Query: 523 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYFMKILTER 666
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T + +L +R
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 251
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 87.4 bits (207), Expect = 2e-18
Identities = 38/83 (45%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEXHPVLLTEAPLNPKANREXMT 439
RG+L ++ PIE GI+ NW DME+IW + + ++ L PE HP+LLTE PL N+E +
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 440 QIMFETFNTPAMYVAIQAVLSLY 508
+ +ET N PA+ ++Q VL+LY
Sbjct: 126 EYFYETLNVPALSFSLQPVLALY 148
Score = 68.1 bits (159), Expect = 1e-12
Identities = 28/54 (51%), Positives = 42/54 (77%)
Frame = +1
Query: 511 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYFMKILTERGY 672
S RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDY L + G+
Sbjct: 150 SARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGH 203
Score = 67.7 bits (158), Expect = 2e-12
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAR 257
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EA+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 62.5 bits (145), Expect = 6e-11
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = +2
Query: 287 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEXHPVLLTEAPLNPKANREXMTQIMFETFNT 466
P E +++NWD ME++ +TF +L + HP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 467 PAMYVAIQAVLSLYRPVVPPVS 532
P++ I + S Y P S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 197
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 33.9 bits (74), Expect = 0.023
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 520 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYFMKILTERGYSF 678
++GIVL+ G+ SH +P+ G + R+ G + Y +K+ + SF
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 59.7 bits (138), Expect = 4e-10
Identities = 30/85 (35%), Positives = 44/85 (51%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEXHPVLLTEAPLNPKANREX 433
KS G + +K I +G V NWD +W + +L+ P HP+L+TE NP NR
Sbjct: 58 KSNPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK 116
Query: 434 MTQIMFETFNTPAMYVAIQAVLSLY 508
+ MFE+ PA Y+A Q + +
Sbjct: 117 TLETMFESLRCPATYLAKQETCAAF 141
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 188
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +1
Query: 502 AVPSGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYFMKILTERGY 672
A SG+ T ++D G S IY+G+ L +G + D + L ++ +
Sbjct: 140 AFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 48.4 bits (110), Expect = 1e-06
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +2
Query: 296 HGIVTNWDDMEKIWHHTFYNELRVAPEXHPVLLTEAPLNPKANREXMTQIMFETFNTPAM 475
+GI+ +W+ W +L+V P + +++TE NP++ R+ + + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 476 YVAIQAV 496
Y+ QAV
Sbjct: 134 YLTKQAV 140
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 251
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDE 56
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 39.5 bits (88), Expect = 5e-04
Identities = 15/49 (30%), Positives = 31/49 (63%)
Frame = +1
Query: 529 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYFMKILTERGYS 675
+V+DSG +H +P+ + A+ R+D+ G+ LT+Y ++++ R Y+
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYN 207
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 39.1 bits (87), Expect = 6e-04
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +2
Query: 287 PIEHGIVTNWDDMEKIWHHTFYNELRVAPE----XHPVLLTEAPLNPKANREXMTQIMFE 454
PI+ G V +W+ ++ W H Y+ L P +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 455 TFNTPAMYVAIQAVLSLY 508
P +A + ++ LY
Sbjct: 172 ECQVPGFTIAYEPLMGLY 189
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.9 bits (69), Expect = 0.092
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +1
Query: 511 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYFMKILTERGYSF 678
+G + V+D G + + EG +P++ ++++ G D+T FMK+L + +
Sbjct: 288 AGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.9 bits (64), Expect = 0.37
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -1
Query: 319 IPVSDDSVFDGVFEGQDTSFALASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 140
+P + +V +TSFAL ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 139 PALHIP 122
P L+ P
Sbjct: 123 PQLNSP 128
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.37
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 244 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 83
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +2
Query: 512 PVVPPVS-CWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQTT 643
P VPP S T + PT ST SP P+ + +TS T
Sbjct: 193 PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPT 237
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.5 bits (63), Expect = 0.49
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +2
Query: 347 FYNELRVAPEXHPVLLTE--APLNPKANREXMTQIMFETFNTPAM---YVAIQ 490
+Y L E HP+LLT+ A L P+ + + +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 29.1 bits (62), Expect = 0.65
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 512 PVVPPVSCWTPATVSP-TPCPSTKDTHSPTPSCVWT*PVATSQTTS*RFSPNAVTRFITN 688
P P V + A SP TP P K+T +P+ S P ATS T+ R P A R N
Sbjct: 504 PSTPSVRSASRAMTSPRTPLPRVKNTQNPSRSISAEPPSATS--TANRRHPTA-NRIDIN 560
Query: 689 RRXGNRS 709
R + S
Sbjct: 561 ARLNSAS 567
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 512 PVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 604
P VP S P+ P P PS++ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 521 PPVSCWTPATVSPTPCPSTKDTHSP 595
PPV+C TP P C K H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 247 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 131
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 26.6 bits (56), Expect = 3.5
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -3
Query: 278 GSGYLFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 105
G G F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 147 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 251
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 6.1
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = +3
Query: 456 HST-RPPCTSPSKPCSRCTV-RSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSR 629
HST R TSP+ R R+ +R G RR P+R HL R RH + R
Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHH---RHSTTNYHSKR 177
Query: 630 PHRLLHEDSH 659
R H
Sbjct: 178 DDRYERRREH 187
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 530 SCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQTTS*RFSPNAVTRFIT 685
SC PATV + T P P+ + V T+ TT+ P +VT +T
Sbjct: 169 SC-NPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLT 219
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +2
Query: 425 REXMTQIMFETFNTPAMYVAIQAVLSLYRPVVPPVSCWTPATVSPTPCPSTKDTHSPTP 601
RE + Q+ + P+ Y+ LS YR +P + P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLSPYR---------SPNSY-PSLLPSTHSPHSPAP 182
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 237 KSPSVPYRPSRPDGGAFPRSRGTR 166
K+PS PY SRP A S TR
Sbjct: 312 KAPSYPYSSSRPSASASLASSPTR 335
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 453 KHSTRPPCTSPSKPCSRCTVRSYHRYRAGLR 545
KH+ R SKP TVR+ H++ + R
Sbjct: 942 KHTIRYAVYPHSKPLDSSTVRAAHKFNSNFR 972
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,770
Number of Sequences: 5004
Number of extensions: 66585
Number of successful extensions: 227
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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