Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0271
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.70 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.93 
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   8.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 12/54 (22%), Positives = 29/54 (53%)
 Frame = -1

Query: 499 EHGLDGDVHGGRVECFEHDLGHXLSVGLGVEGSLSEQDWVXLGGDTQLIVEGMM 338
           +HG+  +  GG ++C +      +++    E  + + + + L GD + +VEG++
Sbjct: 271 KHGIVIEELGGEIQCVKISALKGINLRELTEAIIVQAELMDLKGDLEGLVEGVI 324


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 480 SPSKPCSRCTVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRP 632
           S ++     T +++HR        C P   +L +I + P HP +  S S P
Sbjct: 55  SGTRSSESLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPAS-STSLP 104


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 123 GMCKAGFAGD 152
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,747
Number of Sequences: 438
Number of extensions: 5292
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)