Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0270
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   0.65 
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    28   1.5  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    26   4.6  
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces...    25   8.0  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 278 YWL-LRVSHKPTFPSIFLA 225
           YWL L + H PT+P +FLA
Sbjct: 386 YWLNLAIDHTPTYPELFLA 404


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 301 YSQHLHWNIGC*GYPISQRFRQYSW 227
           Y + L WN+     P+SQR + ++W
Sbjct: 12  YHELLDWNVKAPHVPLSQRLKHFTW 36


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 376 LHPDQDQTLVHYSVWPYSASQKKDSLVAISQ 468
           LHPD   T +H  +    +S   D+ + ISQ
Sbjct: 69  LHPDLYSTFIHTGIATIVSSSDNDNKICISQ 99


>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 504 LASTFDNFSSWVLRDCNKGILLLAGTVRPNTIV 406
           L S  D  +  + +   K + +L GTVRP  IV
Sbjct: 33  LGSLIDYMAQIIEKPSQKDLFILNGTVRPGIIV 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,529
Number of Sequences: 5004
Number of extensions: 60528
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)