Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0270
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0085 + 28264399-28266186                                         31   1.2  
03_05_0181 - 21621561-21621932,21622024-21622329                       28   8.3  
03_05_0180 + 21593763-21594605                                         28   8.3  

>11_08_0085 + 28264399-28266186
          Length = 595

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 307 QFNIPFKFGIEIKSGLIKFRVEPLHPDQDQTLVHYSVWPYSA 432
           +F +PF+F   + +       E LH + D+ LV   +W +SA
Sbjct: 382 EFRVPFRFQAVVAAKWETVGAEDLHIEPDEVLVVNDLWSFSA 423


>03_05_0181 - 21621561-21621932,21622024-21622329
          Length = 225

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 498 STFDNFSSWVLRDCNKGILLLAGTVRPNTIV 406
           S  DN +S+VL D  +G+ + AGT RP   V
Sbjct: 52  SAADNMASYVL-DLRRGLAVFAGTGRPEEAV 81


>03_05_0180 + 21593763-21594605
          Length = 280

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 498 STFDNFSSWVLRDCNKGILLLAGTVRPNTIV 406
           S  DN +S+VL D  +G+ + AGT RP   V
Sbjct: 72  SAADNMASYVL-DLRRGLAVFAGTGRPEEAV 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,877,908
Number of Sequences: 37544
Number of extensions: 355220
Number of successful extensions: 777
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)