Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0270
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_14450| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00024)         28   6.4  
SB_54521| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 885

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 374 GSTLNFISPDLISIPNLNGMLNWSLFTTPTLEYWLLRVSHKPT 246
           G    + + DL+ IP+ + M   SL T+ + + W  R S KPT
Sbjct: 111 GKPQGYFAEDLVPIPSQSNMPQGSLSTSRSHDCW-KRTSSKPT 152


>SB_14450| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00024)
          Length = 290

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 16  SGAEKHYTKVYNQDQVSIMFPVASGMPFIFKYKEPAVIHFQS 141
           + +++ Y  VY  D VS++       P     +EP ++HF+S
Sbjct: 100 TSSKEQYAYVYRSDLVSVVSKYVYSDPKDLFEREPFIVHFRS 141


>SB_54521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 130 HFQSKLKGKFSFPSKDN-KYYEANMIKDVQFTYARNIDGNVGLWDTLSNQYSSVGVVN 300
           HF+S+L+      +K   K    N +KD++  +   +    GLW   S  Y+ + V+N
Sbjct: 29  HFKSELQNSVRAAAKQICKSSLVNFMKDLETYWQTELVNTAGLWKQASEVYADI-VIN 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,976,843
Number of Sequences: 59808
Number of extensions: 419545
Number of successful extensions: 3262
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3262
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)