Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0270
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-3|CAA86338.2|  680|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z46242-2|CAA86335.2|  683|Caenorhabditis elegans Hypothetical pr...    31   0.80 

>Z46242-3|CAA86338.2|  680|Caenorhabditis elegans Hypothetical
           protein F35G12.4b protein.
          Length = 680

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
 Frame = +1

Query: 199 MIKDVQFTYARNIDGNVGLWDTLSNQ---------YSSVGVVNKLQFNIPFKFGIEIKSG 351
           M+ D +    R+ DGNV L+D L+ +         +  V   N  Q  IP  F ++ KSG
Sbjct: 399 MLSDKRHVLTRDSDGNVALYDVLAARKIKDYGKRIFEEVVDENSRQVYIPSWFVVDSKSG 458

Query: 352 LIKFRVEPL 378
           +++  ++ L
Sbjct: 459 MLQITLDEL 467


>Z46242-2|CAA86335.2|  683|Caenorhabditis elegans Hypothetical
           protein F35G12.4a protein.
          Length = 683

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
 Frame = +1

Query: 199 MIKDVQFTYARNIDGNVGLWDTLSNQ---------YSSVGVVNKLQFNIPFKFGIEIKSG 351
           M+ D +    R+ DGNV L+D L+ +         +  V   N  Q  IP  F ++ KSG
Sbjct: 399 MLSDKRHVLTRDSDGNVALYDVLAARKIKDYGKRIFEEVVDENSRQVYIPSWFVVDSKSG 458

Query: 352 LIKFRVEPL 378
           +++  ++ L
Sbjct: 459 MLQITLDEL 467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,644,744
Number of Sequences: 27780
Number of extensions: 326166
Number of successful extensions: 701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)