Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0270
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67040.1 68414.m07624 expressed protein ; expression supporte...    30   1.3  
At1g66345.1 68414.m07535 pentatricopeptide (PPR) repeat-containi...    29   2.3  
At3g09010.1 68416.m01055 protein kinase family protein contains ...    28   5.2  
At2g07779.1 68415.m00895 expressed protein                             28   6.9  
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea...    28   6.9  
At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE...    28   6.9  
At1g09440.1 68414.m01056 protein kinase family protein contains ...    28   6.9  
At3g05370.1 68416.m00586 disease resistance family protein conta...    27   9.2  

>At1g67040.1 68414.m07624 expressed protein ; expression supported
           by MPSS
          Length = 826

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +1

Query: 202 IKDVQFTYARNIDGNVGLWDTLSN---QYSSVGVVNKLQFNIP--FKFGIEIKSGLIKFR 366
           ++D+   Y R   G    W ++ N   +Y+S G V    F+    F    +  SG ++  
Sbjct: 576 VRDIDMPYRRK--GKTEFWSSIGNANSEYTSPGSVLDASFSNESCFSNSFDNISGQMRLP 633

Query: 367 VEPLHPDQD 393
           +EP+ PD D
Sbjct: 634 LEPIEPDWD 642


>At1g66345.1 68414.m07535 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 544

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 145 LKGKFSFPSKDNKYYEANMIKDVQFTY-ARNIDGNVGLWDTLSNQYSSVGVVNKLQFNIP 321
           + G FSF SK N     N  + +   Y ++++  N   W+TLS ++SS+ + + L   I 
Sbjct: 28  IHGFFSFSSKTNP--NPNKQQQILIDYISKSLQSN-DTWETLSTKFSSIDLSDSLIETIL 84

Query: 322 FKF 330
            +F
Sbjct: 85  LRF 87


>At3g09010.1 68416.m01055 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 393

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
 Frame = +1

Query: 19  GAEKHYTKVYNQDQVSIMFPVASGMPFIFKYKEPAVIHFQSKLKG---KFSFPSKDNKYY 189
           G+   Y  +    + +I    ASG+ F+ +  EP V+H   K        +F  K   + 
Sbjct: 133 GSRSRYVPLDWSKRAAICVGTASGLAFLHEEVEPHVVHRDIKASNILLDSNFSPKIGDFG 192

Query: 190 EANMIKDVQFTYARNIDGNVGLWDTLSNQYSSVGVVNK 303
            A +  D     +  + G VG    L+ +Y+ +G + K
Sbjct: 193 LAKLFPDNVTHVSTRVAGTVGY---LAPEYALLGQLTK 227


>At2g07779.1 68415.m00895 expressed protein
          Length = 91

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 427 SASQKKDSLVAISQDPATKIVERRSKVFQ*TLSTV 531
           S SQK+D+   +   P   +VERR  V    LS +
Sbjct: 11  SGSQKRDACARVRNQPYFSLVERRHSVLAGVLSRI 45


>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
           family protein similar to Sec31p (GI:13928450)  {Oryza
           sativa}
          Length = 969

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 235 IDGNVGLWDTLSNQYSSVGVVNKL 306
           +DGN+GLW+ +S++   +  V  L
Sbjct: 88  VDGNIGLWNPISSESGEIAHVRDL 111


>At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE)
           similar to cytokinesis-related Sec1 protein KEULE
           [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
           Pfam domain, PF00995: Sec1 family
          Length = 666

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 435 PKEGFPCCNLSRPSY*NCRT*KQGISVDSKYGQSTHGRNLRARXXPT 575
           PKE FPC N   PS+    +     S  S  GQ+   +++R+R  PT
Sbjct: 533 PKEDFPCMNDPSPSFHGSTSLSSAAS--SSQGQA--AQSMRSRRTPT 575


>At1g09440.1 68414.m01056 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 466

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 29/164 (17%), Positives = 75/164 (45%), Gaps = 5/164 (3%)
 Frame = +1

Query: 19  GAEKHYTKVYNQDQVSIMFPVASGMPFIFKYKEPAVIHFQSKLKGKF---SFPSKDNKYY 189
           GA KH+  +  + ++ ++   +  + ++ +  EP V+H   K         F +K + + 
Sbjct: 244 GAMKHHGYLTWEARMKVLTGTSKALAYLHEAIEPKVVHRDIKSSNILIDDRFNAKISDFG 303

Query: 190 EANMIKDVQFTYARNIDGNVGLWDTLSNQYSSVGVVNKLQFNIPFKFGIEIKSGLI-KFR 366
            A ++ D +      + G  G    ++ +Y++ G++N  + +  + FG+ +   +  +  
Sbjct: 304 LAKLLGDGKSHVTTRVMGTFGY---VAPEYANTGLLN--EKSDVYSFGVLVLEAITGRDP 358

Query: 367 VEPLHPDQDQTLVHYSVWPYSASQKKDSL-VAISQDPATKIVER 495
           V+   P  +  LV +      + + ++ +   I+  PAT+ ++R
Sbjct: 359 VDYARPANEVNLVEWLKMMVGSKRLEEVIDPNIAVRPATRALKR 402


>At3g05370.1 68416.m00586 disease resistance family protein contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2 disease resistance
           protein GB:AAC15780 from [Lycopersicon pimpinellifolium]
          Length = 860

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/37 (48%), Positives = 19/37 (51%)
 Frame = -3

Query: 365 LNFISPDLISIPNLNGMLNWSLFTTPTLEYWLLRVSH 255
           LN I  DL S  NL G     LFT PTLE   L  +H
Sbjct: 302 LNLIELDL-SFNNLTGSFPTFLFTIPTLERVNLEGNH 337


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,819,526
Number of Sequences: 28952
Number of extensions: 304689
Number of successful extensions: 698
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)