Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0269
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   3.5  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    26   3.5  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    25   6.1  
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    25   8.0  

>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 187 PFVAIMATRLLRAGVCFVYNFXQGSRYRFYERTLN 83
           PFV ++ +R    G+C +     G RY+  + +L+
Sbjct: 383 PFVIVVGSRFQEEGICEIIVRSSGERYKLDKDSLH 417


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -2

Query: 191 LTLC--CHNGHSLIASRRVFC 135
           +TLC  C  GHS +++R VFC
Sbjct: 190 VTLCSVCQRGHSPLSNRIVFC 210


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = -2

Query: 227 DFVAGRQSAHRSLTLCCHNGHSLIASRRVFCLQFXTGQSLSLL*AYVEWTNPNQ*KYSVD 48
           D + G +S H+ L +   NG     SR V  L   TG S + L  Y+E    +  K+ +D
Sbjct: 470 DPIDGSESKHQGLYIKFENG-----SRIVTRLS-GTGSSGATLRLYMEKHESDSSKFDLD 523

Query: 47  AQCAAR 30
           AQ A +
Sbjct: 524 AQVALK 529


>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 187 PFVAIMATRLLRAGVCFVYNFXQGSRYRFYERTLNGRIPTNKNIVWMR 44
           PF  ++    +   +   ++  +  RY FY   LNG IP    + W+R
Sbjct: 92  PFSYVIEGSPIYLSMIIAWSITEIIRYAFYAFNLNGDIPA--FLTWLR 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,421
Number of Sequences: 5004
Number of extensions: 36476
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)