Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0269
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720...    30   1.2  
09_06_0281 + 22014394-22015534,22016041-22017056                       30   1.5  
07_03_1460 - 26687630-26688310                                         29   3.5  
01_01_1205 - 9693702-9694517,9694591-9695076,9697014-9697095,969...    28   4.7  
02_05_1148 - 34458732-34460627,34462299-34462547                       28   6.2  
01_06_0424 - 29237398-29237730,29238620-29238668,29240099-29240544     28   6.2  
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290...    27   8.2  

>11_05_0004 -
           18269416-18269473,18270319-18270509,18271061-18272004,
           18272083-18272254,18272332-18272407,18272498-18272617,
           18272795-18272959,18273048-18273138,18273673-18273757,
           18273873-18274043,18274151-18274207,18274290-18274385,
           18275223-18275365,18275464-18275530
          Length = 811

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +1

Query: 214 PATKSRPYNGSTTE-VQGIGRTRHRRARVHSARLVQERGQTALHDVTIIVTRHGQE 378
           P +K +  NGST E V       H R RVHS         T+ H    ++ RH  E
Sbjct: 118 PESKQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADE 173


>09_06_0281 + 22014394-22015534,22016041-22017056
          Length = 718

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 218 RQNRGHTTGQRRKSKASVARDIGVPESTLRGWCKNEDKLR 337
           +QNRGH   Q    KA +A  + +P S L     N DK R
Sbjct: 422 KQNRGHLLQQLVSQKADIAERMIIPLSELEKATNNFDKSR 461


>07_03_1460 - 26687630-26688310
          Length = 226

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
 Frame = +3

Query: 162 RVAIMATKGKRPM----RALTPGDKIEAIQRVNDGSPRHRSHET*ACQSPLCAAGARTRT 329
           R+AI   +GK        A T GD+ E       GSPR R+           AAG R  +
Sbjct: 19  RLAIAQARGKEEWGGRTEATTSGDRREGCPTAQAGSPRSRAEGE-------RAAGVRVIS 71

Query: 330 NCAT*RHDYRHPTRTR-AMTAS 392
           +CA  R  ++H  R R A TA+
Sbjct: 72  SCA--RRLHQHARRRREARTAA 91


>01_01_1205 -
           9693702-9694517,9694591-9695076,9697014-9697095,
           9697876-9698051,9698326-9698580
          Length = 604

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 172 MATRLLRAGVCFV-YNFXQGSRYRFYERTLN 83
           M  RLLRAG+C   +NF  GS + +++ TL+
Sbjct: 36  MIGRLLRAGMCVARFNFSHGS-HEYHQETLD 65


>02_05_1148 - 34458732-34460627,34462299-34462547
          Length = 714

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +2

Query: 317 KNEDKLRYMTSRLSSPDTDKS--NDGEPLE 400
           ++  +L +MTS L  PDTD+S  ND EPL+
Sbjct: 175 RSSGRLHHMTSLL--PDTDRSIFNDDEPLD 202


>01_06_0424 - 29237398-29237730,29238620-29238668,29240099-29240544
          Length = 275

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 254 KSKASVARDIGVP-ESTLRGWCKNEDKLRYMTSRL 355
           +++  ++R +  P E T  GW K +D LRY   R+
Sbjct: 145 RNRMRISRAVRRPAEETSSGWTKEDDMLRYKLERV 179


>02_01_0399 -
           2905026-2905406,2905522-2905630,2905809-2907475,
           2907650-2907790,2907870-2908043,2908577-2908851,
           2909592-2909755,2910409-2910536,2910628-2910734,
           2911747-2911880,2912266-2912441,2912530-2914257,
           2915084-2915239,2915328-2915486,2915581-2915751,
           2915931-2916047,2916417-2916473,2916565-2916680,
           2916790-2916916,2917862-2917945
          Length = 2056

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 222 KIEAIQRVNDGSPRHRSHET*ACQSPLCAA 311
           KIE I++   GSP   SHE  +C   L  A
Sbjct: 290 KIEQIKKSRAGSPNFESHEVESCDLQLSIA 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,487,880
Number of Sequences: 37544
Number of extensions: 284861
Number of successful extensions: 979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)