Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0269
(579 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06) 33 0.17
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 29 2.1
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_43292| Best HMM Match : FYRN (HMM E-Value=6.3e-15) 27 8.4
SB_35214| Best HMM Match : FYRN (HMM E-Value=6.3e-15) 27 8.4
SB_24333| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_48580| Best HMM Match : FYRN (HMM E-Value=6.3e-15) 27 8.4
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28) 27 8.4
>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
Length = 1425
Score = 33.1 bits (72), Expect = 0.17
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Frame = +2
Query: 197 YARSDARRQNRGHTTGQRRKSKASVA-RDIGVPEST-LRGWCKNEDKLRYMTSRLSSPDT 370
Y R +R Q KSK V +D P S + G ++D+L Y R SS T
Sbjct: 591 YGRQGRKRSQESGPV-QALKSKEGVPLKDYATPSSLPVNGSSNSQDELDYDVPRPSSMVT 649
Query: 371 DKSNDGEPLEKRARTVXXXXXXXXXXXGLDLTAASIPTSTATQL 502
DK+ND + KR V G +T + P T ++
Sbjct: 650 DKNND-DTNSKRDSGVTRESSTERDRAGSGVTECAKPRQTRQEI 692
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/86 (24%), Positives = 40/86 (46%)
Frame = +3
Query: 6 SARGEISDTCRALRIHTIFLLVGIRPFNVRS*KR*RLPCXKL*TKHTPARNKRVAIMATK 185
S R + + T ++ + T++ +P R+ + R PC + + +VA+ +
Sbjct: 324 SERAQNNSTLNSINM-TLYGRASAQPIGARNADKFR-PCMLI-AERQRVLAAQVALRRQQ 380
Query: 186 GKRPMRALTPGDKIEAIQRVNDGSPR 263
+ + L PGD A+ RVND P+
Sbjct: 381 MQEQRQPLPPGDVYTALHRVNDDDPQ 406
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 254 KSKASVARDIGVPESTLRGWCKNEDKLRYMTSRLSSPDTDKSNDGEPLEKRART 415
KS+ + + G P + G E+ + + D +K NDGE E+ T
Sbjct: 331 KSECTTSDSEGTPSAATYGKSDGEENVAQESEESLDDDDNKENDGEEKEEEEAT 384
>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2839
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 136 QNTRRLAISEWPLWQQRVSDLCAL*RPATKSRPYNGSTTEVQ 261
QN RL +S++ +Q+ + A+ RPA K RP N T ++
Sbjct: 2447 QNVNRLDLSQFSQYQKNGKEE-AVSRPAGKQRPKNEITASIE 2487
>SB_43292| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
Length = 645
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 221 QNRGHTTGQRRKSKASVARDIGVPESTLRGWCKNED 328
Q GHT QR+ K S+A +I ST C +E+
Sbjct: 404 QTSGHTQRQRKPRKGSLAEEIAKATSTHIVVCTDEN 439
>SB_35214| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
Length = 762
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 221 QNRGHTTGQRRKSKASVARDIGVPESTLRGWCKNED 328
Q GHT QR+ K S+A +I ST C +E+
Sbjct: 256 QTSGHTQRQRKPRKGSLAEEIAKATSTHIVVCTDEN 291
>SB_24333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 299 WTLARLCLVRPMPWTSVVDPLYGLDFV 219
W+ R C+V P+ S+++PLYG +
Sbjct: 219 WSTGR-CMVEPLYGRSMIEPLYGRSMI 244
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +1
Query: 211 RPATKSRPYNGSTTEVQGIGRTRHRRARVHSARLVQERGQTALHDVTIIVTRHGQEQ*RR 390
R K+ + S + GR+RH+ +R ++R + R +T H+ +RH + +
Sbjct: 76 RSRHKTSRHESSRHKTSRHGRSRHKTSRHETSRHERSRHETRQHE----RSRHKTSRHEK 131
Query: 391 ASRETCTH 414
+ ET H
Sbjct: 132 SRHETSRH 139
>SB_48580| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
Length = 847
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 221 QNRGHTTGQRRKSKASVARDIGVPESTLRGWCKNED 328
Q GHT QR+ K S+A +I ST C +E+
Sbjct: 404 QTSGHTQRQRKPRKGSLAEEIAKATSTHIVVCTDEN 439
>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
Length = 998
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 135 TKHTPARNKRVAIMATKGKRPMRALTPGDKIEAIQRVNDGSPRHR 269
TK +PA +R + T P +LTP + QRV D P H+
Sbjct: 347 TKPSPATRRRSHTLDTITTSPTPSLTPIGEAVIPQRVLDSMPVHQ 391
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,032,670
Number of Sequences: 59808
Number of extensions: 349052
Number of successful extensions: 1048
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -