Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0269
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          28   0.077
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.9 bits (59), Expect = 0.077
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 179 NKG*ATYARSDARRQNRGHTTGQRRKSKASVARDIGVPESTLRGWCKNE 325
           N    T++ +D  R      +GQ    +AS   + G+P  TL G CK E
Sbjct: 514 NASPTTWSPADLDRALEAIRSGQTSVQRAST--EFGIPTGTLYGRCKRE 560


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 179 CHNGHSLIASRRVFCL 132
           CH+G SL  SR + CL
Sbjct: 136 CHSGSSLTKSRLMRCL 151


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/43 (27%), Positives = 14/43 (32%)
 Frame = +2

Query: 401 KRARTVXXXXXXXXXXXGLDLTAASIPTSTATQLPXHRPTLPW 529
           K ART            G D     IP     ++P   PT  W
Sbjct: 222 KSARTRFDILPLILSANGHDPDYFDIPNELVLEVPLSHPTYDW 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,313
Number of Sequences: 438
Number of extensions: 2598
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)