Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0269
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11) ...    32   0.32 
At5g18980.1 68418.m02255 expressed protein                             28   3.9  
At4g30860.1 68417.m04381 SET domain-containing protein low simil...    28   3.9  
At3g18230.1 68416.m02319 octicosapeptide/Phox/Bem1p (PB1) domain...    28   3.9  
At1g15030.1 68414.m01796 expressed protein                             27   6.8  
At1g65710.1 68414.m07458 expressed protein ; expression supporte...    27   9.0  
At1g59850.1 68414.m06741 expressed protein                             27   9.0  

>At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11)
           identical to DNA repair and meiosis protein (Mre11)
           GI:5524769 from [Arabidopsis thaliana]
          Length = 720

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +2

Query: 197 YARSDARRQNRGHTTGQRRKSKASVARDIGVPESTLRGWCKNEDKLRYMTSRLSSPDTDK 376
           + + D+  ++   T G+ RK  A+  R  G    T +   KNE     +   LSS D D+
Sbjct: 635 FNKPDSSSEDDESTKGKGRKRPATTKRGRGRGSGTSKRGRKNESSSS-LNRLLSSKDDDE 693

Query: 377 SNDGEPLEKR 406
             D E  EK+
Sbjct: 694 DEDDEDREKK 703


>At5g18980.1 68418.m02255 expressed protein
          Length = 835

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 254 KSKASVARDIGVPESTLRGWCKNED 328
           +S+ + ARD  VPE+TL  W KN D
Sbjct: 180 RSREATARDCVVPETTLETW-KNSD 203


>At4g30860.1 68417.m04381 SET domain-containing protein low
           similarity to IL-5 promoter REII-region-binding protein
           [Homo sapiens] GI:12642795; contains Pfam profile
           PF00856: SET domain
          Length = 497

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 377 SCPCRVTIIVTSCSAVCPRSCTSR 306
           SC CRV  I  S    CP SC +R
Sbjct: 297 SCVCRVQCISCSKGCSCPESCGNR 320


>At3g18230.1 68416.m02319 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 666

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 222 KIEAIQRVNDGSPRHRSHET*ACQSPLCAA-GARTRTNCAT*RHDYRHP 365
           K  A+Q+  DGSPR  + +T     PL A  GA+ R  C+   H    P
Sbjct: 30  KSVAVQQPIDGSPRAVATDTGGIPEPLAAVPGAKLRLMCSFGGHIMPRP 78


>At1g15030.1 68414.m01796 expressed protein
          Length = 360

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
 Frame = +2

Query: 185 G*ATYARSDARRQN-RGHTTGQRRKSKASVARDIGVPESTLRGWCKNEDKLRYMTSRLS- 358
           G   YA  DA   + +    G+  +S    +   G    + RG C +++++     +LS 
Sbjct: 125 GIQVYADVDALTSSLQARRQGEESESDFRDSSSEGSSSESERGLCYSKEQISARMDKLSL 184

Query: 359 ---SPDTDKSNDGEPLEKRARTV 418
                +   S+DGEPL  + R +
Sbjct: 185 RKEHQEDSSSDDGEPLSSQGRLI 207


>At1g65710.1 68414.m07458 expressed protein ; expression supported
           by MPSS
          Length = 455

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +2

Query: 203 RSDAR-RQNRGHTTGQRRKSKASVARDIGVPESTLRGWCKNEDKLRYMTSRLSSPDTDKS 379
           RS +R R N G   G  R+   S A+   +  +   G   N    R     ++ P TDKS
Sbjct: 179 RSGSRERGNVGGGGGGSRRVSRSPAKRSEIRNADSCGSSVNSSNNR-PGKFVTIPATDKS 237

Query: 380 NDGEPLEKR 406
           N+ EPL KR
Sbjct: 238 NNVEPLVKR 246


>At1g59850.1 68414.m06741 expressed protein
          Length = 498

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +2

Query: 218 RQNRGHTTGQRRKSKASVARDIGVPESTLRGWCKNEDKLRYMTSRLSSPDTDKSNDGEPL 397
           +Q  G +T     S +S +   G+  S   G  K  + L+     L++P + KSND EPL
Sbjct: 293 KQLEGDSTEVSESSSSSKSASSGL--SATSG--KRSNTLKGKDRNLNTPLSSKSNDVEPL 348

Query: 398 EK 403
           ++
Sbjct: 349 DR 350


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,044,351
Number of Sequences: 28952
Number of extensions: 206071
Number of successful extensions: 592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)