Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0268
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_50110| Best HMM Match : Ank (HMM E-Value=4.6e-20)                   29   3.8  
SB_48511| Best HMM Match : Ank (HMM E-Value=4.6e-20)                   29   3.8  
SB_56089| Best HMM Match : CLN3 (HMM E-Value=9.8e-07)                  28   6.6  

>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 549 LDFPLGTEKTFXANSYASYXYPILSTPPKLTP 644
           LD PL    T+ +       YP+L++PP LTP
Sbjct: 870 LDLPLTHPLTYLSTLTHPLTYPLLTSPPLLTP 901


>SB_50110| Best HMM Match : Ank (HMM E-Value=4.6e-20)
          Length = 296

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 111 ARCENTSFSPERTSNIRSRRPQNDTVRVP 197
           ARC +TS   +R    R RRPQ+   R P
Sbjct: 257 ARCSSTSLQTQREERDRHRRPQSAKPREP 285


>SB_48511| Best HMM Match : Ank (HMM E-Value=4.6e-20)
          Length = 753

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 111 ARCENTSFSPERTSNIRSRRPQNDTVRVP 197
           ARC +TS   +R    R RRPQ+   R P
Sbjct: 257 ARCSSTSLQTQREERDRHRRPQSAKPREP 285


>SB_56089| Best HMM Match : CLN3 (HMM E-Value=9.8e-07)
          Length = 554

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 355 LNQQENITRKQTNSSP*TEARRFLMASTDFSENQ 456
           L+Q EN+ ++Q NSS  TE R  L  + D   +Q
Sbjct: 70  LSQMENLEKEQENSSHVTEERSSLQPNVDSPPDQ 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,413,318
Number of Sequences: 59808
Number of extensions: 325310
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)