Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0268
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99284-2|CAL49452.1|  546|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z92796-7|CAB63230.2|  546|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AL110479-5|CAB60314.2|  397|Caenorhabditis elegans Hypothetical ...    29   2.5  
AC024824-3|AAK85501.1|  543|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF068716-11|AAC17745.2|  174|Caenorhabditis elegans Hypothetical...    28   7.7  

>Z99284-2|CAL49452.1|  546|Caenorhabditis elegans Hypothetical
           protein H25K10.1 protein.
          Length = 546

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 255 GTGIQSNGPMGVTKSPTLKLKVQGTFVYYNXGLSQSTRK-YNEKTNQQF 398
           G   Q NG M  T   T++  VQG   YY  G SQ+    +N +   QF
Sbjct: 70  GWADQGNGQMRYTHRATMQNLVQGKVYYYQVGSSQAMSSIFNFRQPDQF 118



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 267 QSNGPMGVTKSPTLKLKVQGTFVYYNXGLSQSTRK-YNEKTNQQF 398
           Q NG M  T   T++  VQG   YY  G SQ+    +N +   QF
Sbjct: 430 QENGQMRYTHRATMQNLVQGQVYYYQVGSSQAMSSIFNFRQPDQF 474


>Z92796-7|CAB63230.2|  546|Caenorhabditis elegans Hypothetical
           protein H25K10.1 protein.
          Length = 546

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 255 GTGIQSNGPMGVTKSPTLKLKVQGTFVYYNXGLSQSTRK-YNEKTNQQF 398
           G   Q NG M  T   T++  VQG   YY  G SQ+    +N +   QF
Sbjct: 70  GWADQGNGQMRYTHRATMQNLVQGKVYYYQVGSSQAMSSIFNFRQPDQF 118



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 267 QSNGPMGVTKSPTLKLKVQGTFVYYNXGLSQSTRK-YNEKTNQQF 398
           Q NG M  T   T++  VQG   YY  G SQ+    +N +   QF
Sbjct: 430 QENGQMRYTHRATMQNLVQGQVYYYQVGSSQAMSSIFNFRQPDQF 474


>AL110479-5|CAB60314.2|  397|Caenorhabditis elegans Hypothetical
           protein Y105C5B.7 protein.
          Length = 397

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 255 GTGIQSNGPMGVTKSPTLKLKVQGTFVYYNXGLSQS 362
           G   Q NG M  T   T++  VQG   YY  G SQ+
Sbjct: 71  GWADQENGTMRYTHRATMQNMVQGQTYYYQVGSSQA 106


>AC024824-3|AAK85501.1|  543|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.1 protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 559 PWERKKRFXQIRMPVXITRFYQPPXN*PPLXVIPLT 666
           PW  +KRF  +       R Y PP   PP  V PL+
Sbjct: 103 PWSPRKRFSSVETNPGTPRIYLPPPPRPP-PVPPLS 137


>Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/56 (37%), Positives = 26/56 (46%)
 Frame = -2

Query: 301 GLFVTPIGPFDWMPVPCRLVXPNAGAXPVYGLSCHGTRTVSFWGRLERIFEVLSGE 134
           GL    +GPFD     C    P   A  V   S + TR + +WG    IFE+L GE
Sbjct: 829 GLCKENMGPFDKTSTFCGT--PEFLAPEVLSDSSY-TRAIDWWGLGVLIFEMLVGE 881


>Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/56 (37%), Positives = 26/56 (46%)
 Frame = -2

Query: 301 GLFVTPIGPFDWMPVPCRLVXPNAGAXPVYGLSCHGTRTVSFWGRLERIFEVLSGE 134
           GL    +GPFD     C    P   A  V   S + TR + +WG    IFE+L GE
Sbjct: 829 GLCKENMGPFDKTSTFCGT--PEFLAPEVLSDSSY-TRAIDWWGLGVLIFEMLVGE 881


>AF068716-11|AAC17745.2|  174|Caenorhabditis elegans Hypothetical
           protein F26D11.1 protein.
          Length = 174

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 123 NTSFSPERTSNIRSRRPQNDTVRVPW 200
           +T  SPE    +++  P ND+ R+PW
Sbjct: 36  DTFHSPENVEKMKAGTPLNDSDRLPW 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,571,351
Number of Sequences: 27780
Number of extensions: 247255
Number of successful extensions: 506
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)