Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0268
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08010.1 68416.m00978 expressed protein                             27   9.4  
At2g36720.1 68415.m04505 PHD finger transcription factor, putative     27   9.4  
At1g50830.1 68414.m05716 hypothetical protein                          27   9.4  

>At3g08010.1 68416.m00978 expressed protein
          Length = 374

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 444 EICACH*ESSSLCLR*TVGLFSRYIFLLIEK 352
           E+C+   +SS  CL  +VG+ +RY++   +K
Sbjct: 295 EVCSIEADSSKGCLILSVGIATRYVYATYKK 325


>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
          Length = 1007

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 331 SSIITXVFLNQQENITRKQTNSS--P*TEARRFLMASTDFSENQECKXQXK 477
           S+ I+ VF++   N TRK T  +       + +L AST+ S  ++C+ + K
Sbjct: 437 STSISPVFMSSLGNSTRKITRKALRQALVGKAYLSASTNVSSQKKCRSKFK 487


>At1g50830.1 68414.m05716 hypothetical protein
          Length = 768

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 257 TLPLSVPERWCYXSLWFKLPWNANSVIL 174
           +L LSV E+WC  +  F  PW   ++ L
Sbjct: 118 SLILSVSEKWCPETKSFVFPWGEATITL 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,853,156
Number of Sequences: 28952
Number of extensions: 227547
Number of successful extensions: 472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)