Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0267
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48583-2|CAA88471.2|  595|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z48583-2|CAA88471.2|  595|Caenorhabditis elegans Hypothetical
           protein F54B3.3 protein.
          Length = 595

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 95  SRAXAEETWLRRKSHEELGMSGRAREQP*HVQDE 196
           SRA  ++   R+++ EEL M  R +E+    Q+E
Sbjct: 125 SRAEYQDQLARKRAEEELAMKARMQEESLRKQEE 158


>AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical
           protein Y113G7A.1 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 3   SKDTIEMQKLIIFALVV 53
           SK TI+MQ L+IFAL++
Sbjct: 224 SKKTIQMQHLLIFALIL 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,712,546
Number of Sequences: 27780
Number of extensions: 112851
Number of successful extensions: 217
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)