Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0267
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    27   0.077
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    25   0.54 
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    25   0.54 
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    25   0.54 
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    25   0.54 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   0.54 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    25   0.54 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.54 
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    25   0.54 
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    25   0.54 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    24   0.71 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.0  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 0.077
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 274 WTGAFAXQYRSLIWXNP*SFXPLRF 200
           W  AFA    S I+ NP SF P RF
Sbjct: 397 WIPAFAIHRDSAIYPNPDSFDPERF 421


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 105 ELRKHGFEENXMRNWVCLVEHESSRDTSKTNTNRNGXKDY 224
           E +K+    N +RN     +H SSR + + + +R+  ++Y
Sbjct: 195 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 234


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 105 ELRKHGFEENXMRNWVCLVEHESSRDTSKTNTNRNGXKDY 224
           E +K+    N +RN     +H SSR + + + +R+  ++Y
Sbjct: 206 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 105 ELRKHGFEENXMRNWVCLVEHESSRDTSKTNTNRNGXKDY 224
           E +K+    N +RN     +H SSR + + + +R+  ++Y
Sbjct: 206 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 105 ELRKHGFEENXMRNWVCLVEHESSRDTSKTNTNRNGXKDY 224
           E +K+    N +RN     +H SSR + + + +R+  ++Y
Sbjct: 195 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 234


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 105 ELRKHGFEENXMRNWVCLVEHESSRDTSKTNTNRNGXKDY 224
           E +K+    N +RN     +H SSR + + + +R+  ++Y
Sbjct: 206 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 105 ELRKHGFEENXMRNWVCLVEHESSRDTSKTNTNRNGXKDY 224
           E +K+    N +RN     +H SSR + + + +R+  ++Y
Sbjct: 195 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 234


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 105 ELRKHGFEENXMRNWVCLVEHESSRDTSKTNTNRNGXKDY 224
           E +K+    N +RN     +H SSR + + + +R+  ++Y
Sbjct: 211 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 250


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 105 ELRKHGFEENXMRNWVCLVEHESSRDTSKTNTNRNGXKDY 224
           E +K+    N +RN     +H SSR + + + +R+  ++Y
Sbjct: 206 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 105 ELRKHGFEENXMRNWVCLVEHESSRDTSKTNTNRNGXKDY 224
           E +K+    N +RN     +H SSR + + + +R+  ++Y
Sbjct: 206 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 105 ELRKHGFEENXMRNWVCLVEHESSRDTSKTNTNRNGXKDY 224
           E +K+    N +RN     +H SSR + +   +R+  ++Y
Sbjct: 206 ESKKYATSSNSLRNRTHDFQHTSSRYSRERRCSRDRNREY 245


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 110 EETWLRRKSHEELGMSG-RAREQP*HVQDEHEP*RLEGLRIVPDQRPVLXSKGASPGKDC 286
           E+ +L  K ++    +G    EQ    ++ H P R E + ++    P+   +G    K C
Sbjct: 88  EDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSC 147

Query: 287 N 289
           +
Sbjct: 148 H 148


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 110 EETWLRRKSHEELGMSG-RAREQP*HVQDEHEP*RLEGLRIVPDQRPVLXSKGASPGKDC 286
           E+ +L  K ++    +G    EQ    ++ H P R E + ++    P+   +G    K C
Sbjct: 88  EDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSC 147

Query: 287 N 289
           +
Sbjct: 148 H 148


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 110 EETWLRRKSHEELGMSG-RAREQP*HVQDEHEP*RLEGLRIVPDQRPVLXSKGASPGKDC 286
           E+ +L  K ++    +G    EQ    ++ H P R E + ++    P+   +G    K C
Sbjct: 88  EDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSC 147

Query: 287 N 289
           +
Sbjct: 148 H 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,642
Number of Sequences: 438
Number of extensions: 1420
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)