Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0266
         (331 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   0.63 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   0.83 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   0.83 
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   1.9  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   3.3  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   3.3  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   3.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    20   7.7  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.4 bits (48), Expect = 0.63
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 83  TRCXLVHELRKHGFEENLMRNWVCLVEHESSRDTS 187
           TR  L H    H      +  W+ +V  ES  DTS
Sbjct: 248 TRLFLTHRKPFHPASTQSLSRWIKMVLAESGVDTS 282


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 0.83
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +2

Query: 107 LRKHGFEEN-LMRNWVCLVEHESSRDTSKTNTNRNGSK 217
           L K     N  +R ++C  E E+    SK   N  G+K
Sbjct: 320 LEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNK 357


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 0.83
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +2

Query: 107 LRKHGFEEN-LMRNWVCLVEHESSRDTSKTNTNRNGSK 217
           L K     N  +R ++C  E E+    SK   N  G+K
Sbjct: 212 LEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNK 249


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 162 STRHTQFLMRFSSKPCFLSSCTRXHLVNVLASEPTQ 55
           S   T  L R   +  +LS+  R HL +++   PTQ
Sbjct: 48  SKAQTYELERRFRQQRYLSAPEREHLASIIRLTPTQ 83


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 125 RSHVSSAHARDXIS*TFWLQNQRRGQPKR 39
           R  ++SA   +      W QN+R  Q KR
Sbjct: 283 RIEIASALQLNETQVKIWFQNRRMKQKKR 311


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 125 RSHVSSAHARDXIS*TFWLQNQRRGQPKR 39
           R  ++SA   +      W QN+R  Q KR
Sbjct: 72  RIEIASALQLNETQVKIWFQNRRMKQKKR 100


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 125 RSHVSSAHARDXIS*TFWLQNQRRGQPKR 39
           R  ++SA   +      W QN+R  Q KR
Sbjct: 72  RIEIASALQLNETQVKIWFQNRRMKQKKR 100


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 113 KHGFEENLMRNWVCLVEHESSRDTSKT 193
           +HG +E ++   VCL   +   D+ +T
Sbjct: 498 QHGHQELVLGGEVCLWSEQVGPDSLET 524


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,028
Number of Sequences: 336
Number of extensions: 988
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6367260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)