Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0266
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    26   1.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   5.2  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    24   6.8  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    23   9.0  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    23   9.0  

>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 96  RXHLVNVLASEPTQRTTK-AKIINFCISIVSF 4
           R  L N L++   +  TK AK++NFCI I  F
Sbjct: 60  RHLLFNSLSARTFRNLTKCAKVVNFCILISLF 91


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 50  VLCVGSEAKTFTRCXLVHELRKHGFEENLMRNWVCLVEHESSR 178
           +L VGS A  F  C   H  RK+  +   M   + +   ++ R
Sbjct: 165 MLTVGSGASYFHNCLQAHNWRKYSEDSESMSRILFISPEQTGR 207


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -2

Query: 228 NP*SFEPLRFV-FVLDVSRLLSCSTR---HTQFLMRFSSKPCFLSSCTRXHLVNVLASEP 61
           NP S+ P ++  + + V+   +CS      T+FL RFSS       CT    +  LA+  
Sbjct: 163 NP-SYAPTKYEEYGIYVALSFACSALIVLPTKFLARFSSFNVVFQICTILIFIISLAASS 221

Query: 60  TQRT 49
           T  T
Sbjct: 222 TSET 225


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 107 LRKHGFEENLMRNWVCLVEHESS 175
           LR+HG  E   RNW  L   +S+
Sbjct: 64  LRRHGRIEKKRRNWKGLFRRQSN 86


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 101 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 223
           +  RK   ++NL+RN++ L +    R++  +N   +   DY
Sbjct: 473 YHFRKPRDQDNLLRNYIRLRDDIKRRESKISNPPESLLHDY 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,035,307
Number of Sequences: 5004
Number of extensions: 16500
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)