Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0266
         (331 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    28   1.5  
04_01_0374 + 4914864-4914947,4915094-4915217,4921146-4921471,492...    27   4.7  
03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401     27   4.7  
12_02_0938 - 24576419-24576719,24576817-24576969,24577052-245778...    26   6.2  
07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914...    26   6.2  
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437...    26   8.3  

>02_05_0640 -
           30558523-30559027,30559123-30559252,30559388-30559868,
           30560292-30560346,30560537-30560613,30561228-30561315,
           30561490-30561593,30562050-30562231,30562347-30563109,
           30563195-30563438,30564513-30564658,30565158-30565283,
           30565404-30565517,30565595-30565762,30566283-30566528,
           30566605-30566767,30566970-30567064,30567274-30567357,
           30567769-30568055,30568359-30568572,30568923-30569140,
           30569386-30569623,30570312-30571118,30571202-30571301,
           30571694-30571737,30571824-30571973
          Length = 1942

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 183 VSRLLSCSTRHTQFLMRFSSKPCFLSSCTRXHLV-NVLASEPTQRTTKAKIINF 25
           V +L S  T   Q ++R +     L+   R  +V N L+S+P +  T  KII+F
Sbjct: 476 VDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISF 529


>04_01_0374 +
           4914864-4914947,4915094-4915217,4921146-4921471,
           4921527-4921658,4921824-4922362,4922445-4922597,
           4922695-4922995
          Length = 552

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 107 LRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLXQI 238
           L  H  +E +MR+W+ LV     + +  T  N N SKDY   +I
Sbjct: 443 LWSHQDKEYIMRHWILLV--IVPKWSRVTYLNSNKSKDYDFTEI 484


>03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401
          Length = 500

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 232 PDQRPXXXXKGASPXKXCNVKCS 300
           PDQ P     GASP   C+  C+
Sbjct: 9   PDQPPAGAAAGASPCSCCSTPCA 31


>12_02_0938 -
           24576419-24576719,24576817-24576969,24577052-24577884,
           24577966-24578427,24578506-24579213
          Length = 818

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 116 HGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLXQI 238
           H  +E +MR+W+ LV     + +  T  N N SKDY   +I
Sbjct: 712 HQDKEYIMRHWILLV--IVPKWSRVTYLNSNKSKDYDFSEI 750


>07_01_1046 -
           9138000-9138293,9139550-9139714,9139862-9140010,
           9140363-9140510,9140659-9140727,9140827-9141087,
           9141498-9141692,9142932-9143048,9143701-9144477
          Length = 724

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 106 AEETWLRRKSHEELGMSGRAREQP*HVQDEHEP*RLEGLRIXPD 237
           AEE W R  S E + M G     P +V+ +     + G    PD
Sbjct: 663 AEENWARYVSPEMVNMRGHLMRYPINVERDGRVGPVHGYECFPD 706


>04_04_1105 -
           30942735-30942791,30943116-30943466,30943670-30943762,
           30943869-30944072,30944155-30944399,30945019-30945877,
           30946070-30946936,30947113-30947562
          Length = 1041

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 157 QTYPVPHEIFFEAMFPQLMHETAS 86
           Q  P+ HE++ EA   +L++ETA+
Sbjct: 273 QEGPLSHEVYREASHAELIYETAT 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,928,551
Number of Sequences: 37544
Number of extensions: 107787
Number of successful extensions: 254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)