Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0266
         (331 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    29   0.69 
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    29   0.69 
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                27   2.8  
SB_27810| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_29980| Best HMM Match : E-MAP-115 (HMM E-Value=1.3)                 27   3.7  
SB_56871| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.5  
SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)              26   6.5  
SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85)             26   6.5  

>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 119 GFEENLMRNWVCLVEHESSRDTSKTN 196
           GFEE + R W+   + E S D +KTN
Sbjct: 33  GFEEEVKRQWIGCDKLEGSNDITKTN 58


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +1

Query: 112 ETWLRRKSHEELGMSGRAREQP*HVQDEHEP-*RLEG-LRIXPDQ-RPXXXXKGASPXK 279
           E WL RK H E  +S   RE+   V+++H+P  + +   ++  DQ RP    K  SP +
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKPMIKADATYKVKSDQARPNHERKQRSPER 278


>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1145

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 186 DVSRLLSCSTRHTQFLMRFSSK-PCFL--SSCTRXHLVNVLASEPTQRTTKAKIINFCIS 16
           D  +   C++   Q L+    K PC     SC +  + +V A E  Q TT AK ++ C S
Sbjct: 98  DQRKAKCCNSGEHQSLISEDEKLPCLSVKKSCFKEGIASVPAKETDQVTTTAKDVSDCCS 157


>SB_27810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 101 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSK 217
           H  RKH F  N+ R+ +    HE+ ++  K +  R  +K
Sbjct: 61  HRRRKHIFRHNVRRSGISGESHENRKNKKKEHKKRMHAK 99


>SB_29980| Best HMM Match : E-MAP-115 (HMM E-Value=1.3)
          Length = 215

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 112 ETWLRRKSHEELGMSGRAREQP*HVQDEHEP*RLEGLR 225
           E W+RRK  E L    RAR +     +E    R E LR
Sbjct: 162 EEWMRRKDQEALEREERARREAEQKYEEKRKRREEVLR 199


>SB_56871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 183 VSRLLSCSTRHTQFLMRFSS-KPCF 112
           V + LSC  RHT  +++ SS +PC+
Sbjct: 157 VMQTLSCRPRHTDLVIQTSSYRPCY 181


>SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)
          Length = 1097

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 183 VSRLLSCSTRHTQFLMRFSS-KPCF 112
           V + LSC  RHT  +++ SS +PC+
Sbjct: 51  VMQTLSCRPRHTDLVIQTSSYRPCY 75


>SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85)
          Length = 203

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 183 VSRLLSCSTRHTQFLMRFSSKPCFLSS--CTRXHLVNVLASEPTQRTTKAKIINFCISIV 10
           VS    CSTRHT+ ++   ++     S  C   H  N+++      T   ++I  C++ +
Sbjct: 19  VSHPYCCSTRHTRLIVTCITRINMSHSHCCVTCHSRNIVSHPYCCSTRHTRVIVTCLTRI 78

Query: 9   SFA 1
           + +
Sbjct: 79  NMS 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,996,441
Number of Sequences: 59808
Number of extensions: 135057
Number of successful extensions: 288
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)