Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0266
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    26   5.5  
Z48583-2|CAA88471.2|  595|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 144 FLMRFSS--KPCFLSSCTRXHLVNVLASEPTQRTTKAKIINFCISIVSF 4
           FLM FS   K  F        L+N+L    T  + + +++ FCI I+ F
Sbjct: 41  FLMGFSKVYKNAFYKLVQMDLLINLLVYTNTLLSLRLELLPFCIFILKF 89


>Z48583-2|CAA88471.2|  595|Caenorhabditis elegans Hypothetical
           protein F54B3.3 protein.
          Length = 595

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 94  SRA*AEETWLRRKSHEELGMSGRAREQP*HVQDE 195
           SRA  ++   R+++ EEL M  R +E+    Q+E
Sbjct: 125 SRAEYQDQLARKRAEEELAMKARMQEESLRKQEE 158


>AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical
           protein Y113G7A.1 protein.
          Length = 325

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 2   AKDTIEMQKLIIFALVV 52
           +K TI+MQ L+IFAL++
Sbjct: 224 SKKTIQMQHLLIFALIL 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,857,399
Number of Sequences: 27780
Number of extensions: 93299
Number of successful extensions: 258
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)