Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0266
         (331 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33985.1 68417.m04822 expressed protein                             29   1.00 
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    27   4.0  
At3g03980.1 68416.m00419 short-chain dehydrogenase/reductase (SD...    27   4.0  
At2g37370.1 68415.m04583 hypothetical protein                          26   5.3  
At4g19940.1 68417.m02921 F-box family protein contains Pfam PF00...    26   7.0  
At2g10970.1 68415.m01172 invertase/pectin methylesterase inhibit...    26   7.0  
At5g28600.1 68418.m03490 hypothetical protein                          25   9.3  
At1g01220.1 68414.m00036 GHMP kinase-related contains similarity...    25   9.3  

>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 82  HEMXSRA*AEETWLRRKSHEELGMSGRAR 168
           H     A  EE WLR+K  + LG  GR++
Sbjct: 19  HSWSPDADREEAWLRKKGKQSLGRLGRSK 47


>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -2

Query: 159 TRHTQFLMRFSSKPCFLS---SCTRXHLVNVLASEPTQRTTKAKIINFCISIVSF 4
           TR+   L + SSK    S   S    HLVNV   E + R ++  I   C S VSF
Sbjct: 6   TRNMMTLSKRSSKTKTGSVWFSYLEEHLVNVHIFEESPRDSRDAICKLCKSTVSF 60


>At3g03980.1 68416.m00419 short-chain dehydrogenase/reductase (SDR)
           family protein similar to short-chain type
           dehydrogenase/reductase SP:Q08632 [Picea abies]
          Length = 270

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 148 PVPHEIFFEAMFPQLMHETASRERFGFRTNAED 50
           P+  E+FF+   P+L+ + A+   FG    A+D
Sbjct: 210 PIATEMFFDGKTPELVEKIAAESPFGRVGEAKD 242


>At2g37370.1 68415.m04583 hypothetical protein
          Length = 697

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 104 ELRKHGFEENLMRNWVCLVEHESSRDTSKT 193
           ++  H   E L +  V ++EH SS D SKT
Sbjct: 230 DIEAHTLMEKLDKTKVKVLEHASSEDASKT 259


>At4g19940.1 68417.m02921 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain;similar to F-box protein Fbx8
           (GI:6164735) [Homo
           sapiens]|8737673|gb|AV566223.1|AV566223
          Length = 411

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -2

Query: 207 LRFVFVLDVSRLLSCSTRHTQFLMRFSSKP---CFLSSCTRXHLVNVLAS 67
           +RF  V  +   L CS   T  L++ SS P     LSS    HL  VL S
Sbjct: 53  MRFKSVSKLWSSLICSRNFTNRLLKLSSPPRLFMCLSSSDNSHLKTVLLS 102


>At2g10970.1 68415.m01172 invertase/pectin methylesterase inhibitor
           family protein contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 194

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 153 HTQFLMRFSSKPCFLSSCTRXHLVNVL 73
           HTQFL+    KPCF  SC   +  +V+
Sbjct: 101 HTQFLIGSPKKPCF-KSCMENYKDSVV 126


>At5g28600.1 68418.m03490 hypothetical protein
          Length = 711

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -1

Query: 139 HEIFFEAMFPQLMHETASRERFGFRTNAEDNQSENN 32
           ++IF    FP  +  T+ +++ G ++N   N+ + N
Sbjct: 244 NDIFESGCFPSQLQLTSKKQKRGAKSNVSRNEKQPN 279


>At1g01220.1 68414.m00036 GHMP kinase-related contains similarity to
           L-fucose kinase [Homo sapiens] gi|21212956|emb|CAD29647
          Length = 1055

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -1

Query: 97  ETASRERFGFRTNAEDNQSEN---N*LLHFDRIFR 2
           ETAS  R+GFR +  ++  ++   N + H DR+F+
Sbjct: 675 ETASAVRYGFREHLLESSGKSHSENHISHPDRVFQ 709


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,531,321
Number of Sequences: 28952
Number of extensions: 87726
Number of successful extensions: 267
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)