Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0262
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0135 + 5674786-5675040,5675179-5675490,5676505-5677010,567...    32   0.43 
05_03_0349 - 12799736-12799954,12803466-12803595,12804124-12804896     32   0.57 
01_06_0684 + 31196825-31197252,31199189-31199291,31199402-311995...    29   5.3  
01_06_0513 - 29944888-29945943                                         28   9.3  

>10_02_0135 +
           5674786-5675040,5675179-5675490,5676505-5677010,
           5677057-5677103,5677457-5677918,5678071-5678294
          Length = 601

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 373 SRDWWHHMPLLRVRSRVLRNGAAAQTPQHH 462
           S +WW  M  +R  +R  RNG     P+HH
Sbjct: 180 SPEWWTRMDHMRRGARAFRNGPLLYIPEHH 209


>05_03_0349 - 12799736-12799954,12803466-12803595,12804124-12804896
          Length = 373

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 351 TIRRQRPFPGLVASYAPXEGQIACSTQW-SGCSDAATS*GWVDLVVGFGR 497
           TIRR RP P L A  +  +G    S  W   C+  A + G +D+VVG  R
Sbjct: 161 TIRRCRPAPKLEAGMSDGDGVHNSSDVWVDHCTVEACADGLIDVVVGSTR 210


>01_06_0684 +
           31196825-31197252,31199189-31199291,31199402-31199512,
           31199614-31199697,31199915-31199986,31200073-31200129,
           31200427-31200546,31201301-31201324,31201953-31202063,
           31202165-31202202,31202287-31202443,31202700-31202801,
           31202878-31202934,31203113-31203259,31203429-31203499,
           31203582-31203669,31203810-31203866,31203996-31204193
          Length = 674

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 432 WSGCSDAATS*GWVDLVVGFGRNYGN 509
           WSG S AA S GW+D+VV   R +G+
Sbjct: 251 WSGLS-AALSVGWLDIVVNMLRFHGS 275


>01_06_0513 - 29944888-29945943
          Length = 351

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 318 KERRLKKFAECTIRRQRPFPGLVASYAPXEGQIACSTQWSGCSDAATS*GWVDLVVGFGR 497
           K RR  ++A+      RP P    + AP       + +WS  S  A    W D  V  GR
Sbjct: 61  KRRRTDRYAQGFEFAPRPAPATATATAPAPTPARGTPEWSEGSTFALLDAWGDRFVRAGR 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,940,880
Number of Sequences: 37544
Number of extensions: 296439
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)