Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0262
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29300.1 68416.m03678 hypothetical protein                          29   4.4  
At5g61120.1 68418.m07668 expressed protein                             28   5.9  
At1g62950.1 68414.m07108 leucine-rich repeat transmembrane prote...    28   5.9  

>At3g29300.1 68416.m03678 hypothetical protein
          Length = 213

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 305 SLHSSAPGTRYSHCIRCAARTHYNH 231
           +++SS+P   Y+  I+   +THYNH
Sbjct: 73  NINSSSPNPLYTGVIQTPTKTHYNH 97


>At5g61120.1 68418.m07668 expressed protein 
          Length = 326

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 400 LLRVRSRVLRNGAAAQTPQHHEDGLIL 480
           LL  +S  L  G + QTPQH +DG ++
Sbjct: 273 LLTKKSLALLPGTSNQTPQHFDDGYVV 299


>At1g62950.1 68414.m07108 leucine-rich repeat transmembrane protein
           kinase, putative contains protein kinase domains
          Length = 890

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 480 VVGFGRNYGNVTSVGSIFCDLLVIEFVS 563
           ++GF  +Y  +T +    CD+ V+EFVS
Sbjct: 196 LIGFDFSYNGITGLLPRICDIPVLEFVS 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,358,817
Number of Sequences: 28952
Number of extensions: 224252
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)