Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0260
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 134 5e-32
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 118 3e-27
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 111 6e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 43 3e-04
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.067
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 34 0.089
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_21189| Best HMM Match : PCI (HMM E-Value=8.2) 28 5.9
SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 134 bits (325), Expect = 5e-32
Identities = 59/127 (46%), Positives = 88/127 (69%)
Frame = +2
Query: 128 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERXRRFTIDIALWKFETSKYYVT 307
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER + T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 308 IIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 487
++DAP H+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 488 IVGVNKM 508
++ VNKM
Sbjct: 286 VILVNKM 292
Score = 35.1 bits (77), Expect = 0.051
Identities = 14/34 (41%), Positives = 26/34 (76%)
Frame = +1
Query: 496 SKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 597
+K +D T ++E R+EEIK +++ ++KK+G+NP
Sbjct: 290 NKMDDPTVK-WNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 118 bits (285), Expect = 3e-27
Identities = 54/60 (90%), Positives = 55/60 (91%)
Frame = +2
Query: 188 MGKGSFKYAWVLDKLKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQ 367
MGKGSFKYAWVLDKLKAER R TIDIALWKFET KYYVT+IDAP HRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 111 bits (266), Expect = 6e-25
Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Frame = +2
Query: 260 IDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 439
+D+ L +F+T +T++DAP H+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 440 TREHALLAFTLGVKQLIVGVNK--MIPLNHHTVSP 538
TREHA+L +LGV QLIV +NK M+ L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 190
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/110 (23%), Positives = 48/110 (43%)
Frame = +2
Query: 77 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERXRRF 256
+I H D+GK+T T L+ G I +EA + K D ++ ER R
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 257 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTG 406
++ ++ F + I+D P H+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 34.7 bits (76), Expect = 0.067
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 6/122 (4%)
Frame = +2
Query: 59 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 226
T I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 227 KLKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTS--QADCAVLIVAAG 400
E A E S +T ID H ++K I G + D A+L++A
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230
Query: 401 TG 406
G
Sbjct: 231 AG 232
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 34.3 bits (75), Expect = 0.089
Identities = 39/123 (31%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 223
M K+ N+ VI HVD GKST T L+ K G I A + G+ F
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGII----------AAAKAGETRF-----T 56
Query: 224 DKLKAERXRRFTID---IALWKF--ETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLI 388
D K E+ R TI I+L+ E+ Y+T P R F+ N+I D + +
Sbjct: 57 DTRKDEQDRCITIKSTAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEV 116
Query: 389 VAA 397
AA
Sbjct: 117 TAA 119
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 302 VTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTG 406
+T ID P H F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERX 247
N ++ HVD GKST L+ G I K + K VLDKL+ ER
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 248 RRFTI 262
R T+
Sbjct: 1987 RGITV 1991
>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 466 HPRCQTAHRRSKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 594
H + + RR ++N + + P+FE++K + +S KKI N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 511 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 651
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)
Length = 125
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 436 SNP*ACLARFHPRC-----QTAHRRSKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 594
+N A L RF C ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 25 NNEFAALKRFLKNCMHETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 82
>SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 466 HPRCQTAHRRSKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 594
H ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 8 HETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,247,472
Number of Sequences: 59808
Number of extensions: 409748
Number of successful extensions: 1261
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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