Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0260
(661 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 302 1e-82
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 302 1e-82
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 298 2e-81
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 236 1e-62
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 187 5e-48
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 187 5e-48
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 171 3e-43
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 2e-33
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 81 7e-16
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 81 7e-16
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 79 3e-15
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 79 3e-15
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 79 3e-15
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 47 1e-05
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 46 2e-05
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 41 7e-04
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 41 9e-04
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 40 0.001
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 38 0.006
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 35 0.059
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.14
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 32 0.31
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 32 0.41
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 32 0.41
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 31 0.72
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 31 0.72
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.2
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.2
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.2
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.2
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 3.9
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 3.9
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 28 5.1
AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical... 28 6.8
AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical... 28 6.8
AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec... 27 8.9
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph... 27 8.9
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 302 bits (742), Expect = 1e-82
Identities = 143/155 (92%), Positives = 146/155 (94%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 223
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 224 DKLKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGT 403
DKLKAER R TIDIALWKFET+KYY+TIIDAP HRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 404 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508
GEFEAGISKNGQTREHALLA TLGVKQLIV NKM
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKM 155
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = +1
Query: 508 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE 651
DSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE
Sbjct: 156 DSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLE 203
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 302 bits (742), Expect = 1e-82
Identities = 143/155 (92%), Positives = 146/155 (94%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 223
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 224 DKLKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGT 403
DKLKAER R TIDIALWKFET+KYY+TIIDAP HRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 404 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508
GEFEAGISKNGQTREHALLA TLGVKQLIV NKM
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKM 155
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = +1
Query: 508 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE 651
DSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE
Sbjct: 156 DSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLE 203
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 298 bits (732), Expect = 2e-81
Identities = 155/201 (77%), Positives = 160/201 (79%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 223
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 224 DKLKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGT 403
DKLKAER R TIDIALWKFET+KYY+TIIDAP HRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 404 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMIPLNHHTVSPDLRKSRRKYPHTSRR 583
GEFEAGISKNGQTREHALLA TLGVKQL + L T SPD +SRR
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQL-------VSLRSPTRSPD----------SSRR 163
Query: 584 LATTQLLSLSCPFLDGTETTC 646
T Q L D TETTC
Sbjct: 164 SDTIQRLFHLSQSPDSTETTC 184
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 236 bits (577), Expect = 1e-62
Identities = 109/117 (93%), Positives = 112/117 (95%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 223
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 224 DKLKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVA 394
DKLKAER R TIDIALWKFET+KYY+TIIDAP HRDFIKNMITGTSQADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = +1
Query: 508 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE 651
DSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE
Sbjct: 122 DSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLE 169
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 187 bits (456), Expect = 5e-48
Identities = 88/152 (57%), Positives = 110/152 (72%)
Frame = +2
Query: 53 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 232
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 233 KAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEF 412
+ ER R T+DI FETS + ++DAP H+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 413 EAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508
E G GQT+EHALL +LGV QLIV VNK+
Sbjct: 287 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKL 318
Score = 34.3 bits (75), Expect = 0.078
Identities = 15/43 (34%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +1
Query: 526 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLE 651
+S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 323 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK 363
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 187 bits (456), Expect = 5e-48
Identities = 88/152 (57%), Positives = 110/152 (72%)
Frame = +2
Query: 53 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 232
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 233 KAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEF 412
+ ER R T+DI FETS + ++DAP H+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 413 EAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508
E G GQT+EHALL +LGV QLIV VNK+
Sbjct: 305 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKL 336
Score = 34.3 bits (75), Expect = 0.078
Identities = 15/43 (34%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +1
Query: 526 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLE 651
+S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 341 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK 381
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 171 bits (417), Expect = 3e-43
Identities = 77/154 (50%), Positives = 108/154 (70%)
Frame = +2
Query: 47 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 226
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 227 KLKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTG 406
ER + T+++ FET K + TI+DAP H+ F+ NMI G +QAD AVL+++A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 407 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508
EFE G + GQTREH++L T GVK L++ VNKM
Sbjct: 224 EFETGFDRGGQTREHSMLVKTAGVKHLVILVNKM 257
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +1
Query: 496 SKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHG 636
+K +D T + E RF+EI+ +++ +++K+G+NP + +VP SG G
Sbjct: 255 NKMDDPTVK-WEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTG 301
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 2e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 223
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 224 DKLKAER 244
DKLK +
Sbjct: 61 DKLKVTK 67
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 81.0 bits (191), Expect = 7e-16
Identities = 56/152 (36%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Frame = +2
Query: 56 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 229
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 230 LKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGE 409
K E+ R TI++A +E+ + D P H DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 410 FEAGISKNGQTREHALLAFTLGVKQLIVGVNK 505
E QT+EH +LA +GVK + + +NK
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINK 170
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 81.0 bits (191), Expect = 7e-16
Identities = 56/152 (36%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Frame = +2
Query: 56 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 229
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 230 LKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGE 409
K E+ R TI++A +E+ + D P H DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 410 FEAGISKNGQTREHALLAFTLGVKQLIVGVNK 505
E QT+EH +LA +GVK + + +NK
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINK 170
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 79.0 bits (186), Expect = 3e-15
Identities = 54/155 (34%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
Frame = +2
Query: 50 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 229
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 89
Query: 230 LKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGE 409
E+ R TI+ ++ET+K + ID P H D+IKNMITG +Q + A+L+VAA G
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 149
Query: 410 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKM 508
QTREH LLA +GV ++V +NK+
Sbjct: 150 MP-------QTREHLLLARQVGVPLDNIVVFMNKV 177
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 79.0 bits (186), Expect = 3e-15
Identities = 54/155 (34%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
Frame = +2
Query: 50 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 229
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 230 LKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGE 409
E+ R TI+ ++ET+K + ID P H D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 410 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKM 508
QTREH LLA +GV ++V +NK+
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKV 178
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 79.0 bits (186), Expect = 3e-15
Identities = 54/155 (34%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
Frame = +2
Query: 50 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 229
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 230 LKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGE 409
E+ R TI+ ++ET+K + ID P H D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 410 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKM 508
QTREH LLA +GV ++V +NK+
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKV 178
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 47.2 bits (107), Expect = 1e-05
Identities = 42/147 (28%), Positives = 62/147 (42%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERX 247
N ++ HVD GKST L+ CG + +K+ +LDKL+ ER
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 248 RRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 427
R T+ Y + +ID P H DF + + D +L+VAA G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG------- 138
Query: 428 KNGQTREHALLAFTLGVKQLIVGVNKM 508
QT + LAF + Q+I +NK+
Sbjct: 139 VQAQTIANFWLAFEKNI-QIIPVINKI 164
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/113 (30%), Positives = 49/113 (43%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERX 247
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ER
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 248 RRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTG 406
R T+ A + + + +ID P H DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 45.6 bits (103), Expect = 3e-05
Identities = 34/113 (30%), Positives = 48/113 (42%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERX 247
NI + H+DSGK+T T ++Y G ID + +G +D + ER
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID----------SMHEVRGKDDVGATMDFMDLERQ 95
Query: 248 RRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTG 406
R TI A + + IID P H DF + D AVL++ G G
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 41.1 bits (92), Expect = 7e-04
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 1/166 (0%)
Frame = +2
Query: 65 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 244
+N+ ++GHVDSGK+T T + E+G S A +
Sbjct: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTT-TDG 53
Query: 245 XRRFTIDIALWKFET-SKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 421
RR T+D+ + S + +ID P H I+ ++ ++ D A++I+ + AG
Sbjct: 54 IRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108
Query: 422 ISKNGQTREHALLAFTLGVKQLIVGVNKMIPLNHHTVSPDLRKSRR 559
I QT EH LLA ++I+ +NK +S +K R+
Sbjct: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLAEKSKISESAKKVRK 152
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 40.7 bits (91), Expect = 9e-04
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 196
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 197 GSFKYAWVLDKLKAERXR---RF-TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTS 364
+ + L+K E + +F T+++ K + + + + +ID+P H DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 365 QADCAVLIVAAGTG 406
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 40.3 bits (90), Expect = 0.001
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 196
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 197 GSFKYAWVLDKLKAERXR---RF-TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTS 364
+ + L+K E + +F T+++ K + + + + +ID+P H DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 365 QADCAVLIVAAGTG 406
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 37.9 bits (84), Expect = 0.006
Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 12/179 (6%)
Frame = +2
Query: 20 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 190
++IRD P K+ + V+G+VD+GKST G L + G RT K E
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185
Query: 191 GKGSFKYAWVL------DKLKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMI 352
G+ S +L + + +D + +K VT ID H ++K I
Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEKYLKTTI 244
Query: 353 TGTS--QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMIPLN 520
G + D +L++ A G G T+EH LA +L V L+V M P N
Sbjct: 245 FGMTGHMPDYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLVVTKIDMCPAN 296
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 34.7 bits (76), Expect = 0.059
Identities = 26/69 (37%), Positives = 31/69 (44%)
Frame = +2
Query: 302 VTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 481
VT +D P H F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 482 QLIVGVNKM 508
QL+V VNK+
Sbjct: 258 QLVVAVNKI 266
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 504 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 376
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 32.3 bits (70), Expect = 0.31
Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 12/170 (7%)
Frame = +2
Query: 20 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 190
++IRD P K+ + V+G+VD+GKST G L + G RT K E
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185
Query: 191 GKGSFKYAWVL------DKLKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMI 352
G+ S +L + + +D + +K VT ID H ++K I
Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEIYLKTTI 244
Query: 353 TGTSQ---ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 493
G + + +L++ A G G T+EH LA +L V +V
Sbjct: 245 FGMHRPYARNYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV 287
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 31.9 bits (69), Expect = 0.41
Identities = 27/113 (23%), Positives = 46/113 (40%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERX 247
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 248 RRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTG 406
+ + I + Y + IID P H +F M AD V++V A G
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 31.9 bits (69), Expect = 0.41
Identities = 27/113 (23%), Positives = 46/113 (40%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERX 247
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 248 RRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTG 406
+ + I + Y + IID P H +F M AD V++V A G
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 31.1 bits (67), Expect = 0.72
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +2
Query: 50 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 226
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 227 KLKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIV 391
+ E+ R T+ + + +ID+P H DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 31.1 bits (67), Expect = 0.72
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +2
Query: 50 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 226
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 227 KLKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIV 391
+ E+ R T+ + + +ID+P H DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 566 PHTSRRLATTQLLSLSCPFLD 628
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 566 PHTSRRLATTQLLSLSCPFLD 628
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 566 PHTSRRLATTQLLSLSCPFLD 628
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 566 PHTSRRLATTQLLSLSCPFLD 628
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 65 INIVVIGHVDSGKSTTT 115
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 146 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 244
+KR ++ EKE + F Y LDK+K ER
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKER 304
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 146 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 244
+KR ++ EKE + F Y LDK+K ER
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKER 239
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.3 bits (60), Expect = 5.1
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 6/170 (3%)
Frame = +2
Query: 17 QFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC----GGIDKRTIEKFEKEAQ 184
+ ++R P+ ++ + + V+G D GKST G L C G + I +F E +
Sbjct: 154 EVLVRKVPE-SQQFIEVRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIFRFPHEVR 212
Query: 185 EMGKGSFKYAWVLDKLKAERXRRFTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTS 364
GK S V+ + + + E S VT+ID + K I G +
Sbjct: 213 -TGKTSSVCNDVIGFDNRGKLVNYAQNSLEEMVEKSSKLVTLIDLAGDAKYQKTTIHGLT 271
Query: 365 --QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508
A L+VAA + GI+ TREH L L + ++ + KM
Sbjct: 272 GYTPHFACLVVAA-----DRGIT--WATREHLGLIAALNIPMFVL-ITKM 313
>AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical
protein Y54G2A.26b protein.
Length = 549
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 484 AHRRSKQNDSTEPPYSEPRFEEIKKEV 564
AHRR K ND + P YS E++ V
Sbjct: 124 AHRRKKHNDLSSPRYSSNSNEDVDGSV 150
>AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical
protein Y54G2A.26a protein.
Length = 611
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 484 AHRRSKQNDSTEPPYSEPRFEEIKKEV 564
AHRR K ND + P YS E++ V
Sbjct: 186 AHRRKKHNDLSSPRYSSNSNEDVDGSV 212
>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like receptor
TOL-1 protein.
Length = 1221
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = -2
Query: 351 IMFLMKSLCXGASMMVT*YLLVSNFQRAISIVNRRXRSAFSLSNTQAYLKDPLPISWASF 172
I+F++ ++ + V L +S +++ +N+R A SL+ + + PLP+ S+
Sbjct: 997 ILFVIITISIAVLLCVLVILAISFIRKSHDAINQRRYKASSLNCSTSAGSSPLPVPLLSY 1056
Query: 171 SNF 163
F
Sbjct: 1057 HAF 1059
>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosophila)
family protein 1 protein.
Length = 1221
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = -2
Query: 351 IMFLMKSLCXGASMMVT*YLLVSNFQRAISIVNRRXRSAFSLSNTQAYLKDPLPISWASF 172
I+F++ ++ + V L +S +++ +N+R A SL+ + + PLP+ S+
Sbjct: 997 ILFVIITISIAVLLCVLVILAISFIRKSHDAINQRRYKASSLNCSTSAGSSPLPVPLLSY 1056
Query: 171 SNF 163
F
Sbjct: 1057 HAF 1059
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,039,993
Number of Sequences: 27780
Number of extensions: 309581
Number of successful extensions: 954
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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