Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0259
         (767 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    29   0.054
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    26   0.29 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.67 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.7  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   3.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.7  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.7  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   4.7  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   4.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 28.7 bits (61), Expect = 0.054
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
 Frame = +3

Query: 126  CGEIAXPTMIIEPQLMLTAGPSMPYVVPP----QPSPYGYTAQAPSPPPTTGTACRTPPP 293
            CGE   P +     ++  AG      +PP     PS      +    PP+  ++   PPP
Sbjct: 1749 CGEGRHPLLTTIRNVLADAGTGQQETIPPIDEEPPSVEAVEEEREEAPPSVHSSTVVPPP 1808

Query: 294  ASSGGTSL 317
              S   SL
Sbjct: 1809 QHSTTQSL 1816


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +3

Query: 135 IAXPTMIIEPQL---MLTAGPSMPYVVPPQPSP 224
           +  PT ++ P +    LT+ P  PY +  QP+P
Sbjct: 310 VQTPTTVMSPTINCWSLTSSPPPPYQISAQPTP 342


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +3

Query: 225 YGYTAQAPSPPPTTGTACRTPPPASSG--GTSLPTETGALP 341
           YG     P P P+T      PPP S G  G S+P  T   P
Sbjct: 198 YGLRNYGPEPVPSTPY----PPPGSLGSMGVSVPCGTSGNP 234



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 186 PSMPYVVPPQPSPYGYTAQAPSPPPTTGTACRTPPPASSGGTS 314
           P  P       S  G T+ A +PPP T T+  +P   +S  ++
Sbjct: 12  PPAPQSAATPISSSGMTSPAAAPPPAT-TSSGSPASVASNASA 53



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/48 (25%), Positives = 16/48 (33%)
 Frame = +3

Query: 198 YVVPPQPSPYGYTAQAPSPPPTTGTACRTPPPASSGGTSLPTETGALP 341
           Y   P P+P        S   T+  A   P   SSG  +      + P
Sbjct: 7   YEESPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAP 54


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 339 GGRLSQ*GARFPQTRRVAAFYMPYPW*GGARAP 241
           GG L        Q RRVAA  +P    GG R P
Sbjct: 300 GGPLHDHRPALAQQRRVAAVQVPQLAGGGRRGP 332


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 177 TAGPSMPYVVPPQPSPYGYTAQAPSPPPTTGTACRTPPPASSGGTSLP 320
           T+  +M Y+V    SPY Y   A  P P +  +     P    G +LP
Sbjct: 82  TSSFNMGYLV----SPYSYANGAAGPIPVSMASKMGLAPTGHPGAALP 125



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 17/77 (22%), Positives = 24/77 (31%)
 Frame = +3

Query: 129 GEIAXPTMIIEPQLMLTAGPSMPYVVPPQPSPYGYTAQAPSPPPTTGTACRTPPPASSGG 308
           G ++  + +  P  M+   PS     P       Y  Q+P  P       + PPP     
Sbjct: 685 GALSGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDV-KLPPPPHPHH 743

Query: 309 TSLPTETGALPHTDTTP 359
                  G  PH    P
Sbjct: 744 QPPRNPVGTNPHDINNP 760


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 226 YGDGWGGTTYGIDGPAVS 173
           Y +GW G ++ +  PA++
Sbjct: 227 YQEGWNGQSFDVSQPALT 244


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 303 GGTSLPTETGALPHTDTTPHDS 368
           GGT+LP  +  +P  D T  DS
Sbjct: 351 GGTALPDISEIIPTGDDTTMDS 372


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 303 GGTSLPTETGALPHTDTTPHDS 368
           GGT+LP  +  +P  D T  DS
Sbjct: 351 GGTALPDISEIIPTGDDTTMDS 372


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 303 GGTSLPTETGALPHTDTTPHDS 368
           GGT+LP  +  +P  D T  DS
Sbjct: 351 GGTALPDISEIIPTGDDTTMDS 372


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 303 GGTSLPTETGALPHTDTTPHDS 368
           GGT+LP  +  +P  D T  DS
Sbjct: 351 GGTALPDISEIIPTGDDTTMDS 372


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 222 PYGYTAQAPSPP 257
           PYGYT    +PP
Sbjct: 47  PYGYTGSEETPP 58


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 222 PYGYTAQAPSPP 257
           PYGYT    +PP
Sbjct: 47  PYGYTGSEETPP 58


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 222 PYGYTAQAPSPP 257
           PYGYT    +PP
Sbjct: 47  PYGYTGSEETPP 58


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 17/77 (22%), Positives = 24/77 (31%)
 Frame = +3

Query: 129 GEIAXPTMIIEPQLMLTAGPSMPYVVPPQPSPYGYTAQAPSPPPTTGTACRTPPPASSGG 308
           G ++  + +  P  M+   PS     P       Y  Q+P  P       + PPP     
Sbjct: 577 GALSGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDV-KLPPPPHPHH 635

Query: 309 TSLPTETGALPHTDTTP 359
                  G  PH    P
Sbjct: 636 QPPRNPVGTNPHDINNP 652


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,347
Number of Sequences: 336
Number of extensions: 3895
Number of successful extensions: 28
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)