Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0259
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.8  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   3.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.5  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
 Frame = +3

Query: 216 PSPYGYTAQAPSP-----PPTTGTACRTPPPASSGGTSLPTETGALPHT 347
           PSP    A APS      PP  G A    P   +GG +   E   L  T
Sbjct: 511 PSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKST 559


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 762 CRKNKNHQAFYRNQXTKXFEG 700
           CR N   +A+YR    K  +G
Sbjct: 43  CRNNGEEEAYYRKHLLKDADG 63


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 508 IILNIYGGSTFYVCSRYI 561
           I+L   G   FY+ SRY+
Sbjct: 336 IVLGAIGSIVFYIISRYV 353


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = +3

Query: 207 PPQPSPYGYTAQAPSPPPTTGTACRTPPPASSGGTSLPTETGALPHTDTTPHDSRP 374
           PPQ  P      +PS         +   PASS  +S PT   + P ++    +  P
Sbjct: 565 PPQ-CPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDMP 619


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 261 TTGTACRTPPPASSGGTSLPTETGAL 338
           TT  A  TPP    G     T  GAL
Sbjct: 46  TTAAATPTPPSVPVGSAVAGTAGGAL 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,083
Number of Sequences: 438
Number of extensions: 4773
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)