Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0258
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0182 - 12349072-12349149,12349459-12349656,12349746-123497...    29   5.2  
10_03_0041 + 7314749-7315012,7315111-7316157,7317592-7317681,731...    28   6.8  

>04_03_0182 -
           12349072-12349149,12349459-12349656,12349746-12349750,
           12349928-12350041,12350129-12350240,12350363-12350377
          Length = 173

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 499 KCYKCWNFGTSQINIFS 449
           +CYK W +GT  I +FS
Sbjct: 43  ECYKLWRWGTQMIKVFS 59


>10_03_0041 +
           7314749-7315012,7315111-7316157,7317592-7317681,
           7318291-7318332
          Length = 480

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 150 YQNTLASKTLFMSFL*PNCETKLPHLHHC 64
           Y +T  S+  F+ FL P+ + KLP+  HC
Sbjct: 367 YGSTNISRETFVVFLQPSWDKKLPYSGHC 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,046,212
Number of Sequences: 37544
Number of extensions: 376658
Number of successful extensions: 687
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)