Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0258
         (744 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY142216-1|AAN52144.1|  488|Drosophila melanogaster transcriptio...    30   3.8  
AE014297-2482|AAS65168.1|  562|Drosophila melanogaster CG33520-P...    30   3.8  
AE014297-2480|AAN13767.1|  547|Drosophila melanogaster CG33520-P...    30   3.8  

>AY142216-1|AAN52144.1|  488|Drosophila melanogaster transcriptional
           adapter 2A protein.
          Length = 488

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 78  HLHHCLTLTAINFSLFP*LTSHRK 7
           H  HCLT T  NFSL P L  + K
Sbjct: 393 HFTHCLTPTEYNFSLIPDLPGYSK 416


>AE014297-2482|AAS65168.1|  562|Drosophila melanogaster CG33520-PB,
           isoform B protein.
          Length = 562

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 78  HLHHCLTLTAINFSLFP*LTSHRK 7
           H  HCLT T  NFSL P L  + K
Sbjct: 467 HFTHCLTPTEYNFSLIPDLPGYSK 490


>AE014297-2480|AAN13767.1|  547|Drosophila melanogaster CG33520-PA,
           isoform A protein.
          Length = 547

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 78  HLHHCLTLTAINFSLFP*LTSHRK 7
           H  HCLT T  NFSL P L  + K
Sbjct: 452 HFTHCLTPTEYNFSLIPDLPGYSK 475


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,394,700
Number of Sequences: 53049
Number of extensions: 704221
Number of successful extensions: 1252
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)