Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0258
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-17|AAU87811.1|  178|Caenorhabditis elegans C-type lecti...    31   0.65 
AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical...    28   6.1  

>AC024817-17|AAU87811.1|  178|Caenorhabditis elegans C-type lectin
           protein 80 protein.
          Length = 178

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 595 RGGCVYQYHYLPFPLQCIGHFPLHFMSSYGLTYFGYNLGTWWFSL 729
           R  C YQ   + +           F++SY +T FG N G++W  L
Sbjct: 46  RSWCRYQNSVVSYLATVSDQITASFLASYAVTAFGSNEGSFWIGL 90


>AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical
           protein Y102A5C.25 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 452 KYINLGCAEIPTFIAL*ILQYFITKHTLDTITSLY 556
           KYI L    + TF ++ +L Y +T HT  ++TSL+
Sbjct: 223 KYIFLQTMVVFTFKSIQVLVYLMTNHTGISLTSLF 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,967,161
Number of Sequences: 27780
Number of extensions: 398298
Number of successful extensions: 751
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)